Browse Element(s) Details


Os.52384.1.A1_at

Description gb:AK066757.1
DB_XREF= gi:32976775
TID=Os.52384.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074A18, full insert sequence.
FL= gb:AK066757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7193011/11beta-1,3-glucanase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71890Os.35344.18.S1_x_at11/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890Os.35344.3.S1_x_at9/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890OsAffx.22940.5.S1_x_at4/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890OsAffx.22940.5.S1_at3/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71900NANA1+41987276..41989702transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71910Os.45976.1.S1_x_at3/111+41992265..41995947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71930Os.52384.1.A1_at11/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71930OsAffx.2448.1.S1_at1/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71940OsAffx.11821.1.S1_at11/111+42008766..42011226hypothetical protein
LOC_Os01g71950OsAffx.23842.2.S1_x_at11/111+42015240..42017005hypothetical protein
LOC_Os01g71950Os.36178.2.S1_at5/111+42015240..42017005hypothetical protein
LOC_Os01g71950OsAffx.23842.3.S1_x_at4/111+42015240..42017005hypothetical protein
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0031225cellular_componentanchored to membrane
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52384.1.A1_at--704--2771Chr01:42005294..42005318 (25 bp)
AAGAGGCCCGTACCTATAGAGACAT
LOC_Os01g71930
Os.52384.1.A1_at--76--8171Chr01:42005218..42005242 (25 bp)
GGAACTTTGGGCTCTTTGAACCTGA
LOC_Os01g71930
Os.52384.1.A1_at--790--10731Chr01:42005203..42005227 (25 bp)
TTGAACCTGACAAGAGCCCTGTGTA
LOC_Os01g71930
Os.52384.1.A1_at--17--2431Chr01:42005126..42005150 (25 bp)
AAAACTCAACCACTTTTCACTGATC
LOC_Os01g71930
Os.52384.1.A1_at--894--5971Chr01:42005032..42005056 (25 bp)
GAGACAGACCTAGCCCAAAAATCGA
LOC_Os01g71930
Os.52384.1.A1_at--468--7751Chr01:42004870..42004894 (25 bp)
GGTGTCATCACCCTGATACATAGCT
LOC_Os01g71930
Os.52384.1.A1_at--681--1611Chr01:42004849..42004873 (25 bp)
AGCTGATATCATCCTATCCGGACGA
LOC_Os01g71930
Os.52384.1.A1_at--578--551Chr01:42004834..42004858 (25 bp)
ATCCGGACGAGATTCTATCCTGTAG
LOC_Os01g71930
Os.52384.1.A1_at--326--10151Chr01:42004819..42004843 (25 bp)
TATCCTGTAGCATTTCCGTTTTATT
LOC_Os01g71930
Os.52384.1.A1_at--779--3011Chr01:42004794..42004818 (25 bp)
AATGCACCTTGAAACTTCCATTCTC
LOC_Os01g71930
Os.52384.1.A1_at--835--3591Chr01:42004776..42004800 (25 bp)
CATTCTCTCATCCAGATAACCGTTA
LOC_Os01g71930
Target Sequence 
AAGAGGCCCGTACCTATAGAGACATACATTTTTGCCATGTTCAATGAGAACGAGAAAACCGGTGACGAGATAGAGAGGAA
CTTTGGGCTCTTTGAACCTGACAAGAGCCCTGTGTACCCAATCACCTTCTCTTAACCGAAAGGATAGTACAAGGAGGCAG
CTGCTACAAAAACTCAACCACTTTTCACTGATCCTTCCATTTTGTTTTGGCATTTTATTAGGGGTTGCTATATAACGGAA
TCCCGTTTAGACGGATACTCGCGAGACAGACCTAGCCCAAAAATCGAGTGGGGGCATCTTATTAGAATTGATAGTGTGCT
CAAAATTTTTTACTTAATTACACATTAGTAATACACTAAATATTAAATTTGAGTGGAGTCCTAGGACCCCACTCTACATA
CTGTGGATCCGCCCGTGCTCGCAAGGTGTCATCACCCTGATACATAGCTGATATCATCCTATCCGGACGAGATTCTATCC
TGTAGCATTTCCGTTTTATTAATGCACCTTGAAACTTCCATTCTCTCATCCAGATAACCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52384.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis