Browse Element(s) Details


OsAffx.11821.1.S1_at

Description tigr:9629.m07115
TID=OsAffx.11821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7194011/11hypothetical protein
LOC_Os06g113601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71890Os.35344.18.S1_x_at11/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890Os.35344.3.S1_x_at9/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890OsAffx.22940.5.S1_x_at4/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890OsAffx.22940.5.S1_at3/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71900NANA1+41987276..41989702transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71910Os.45976.1.S1_x_at3/111+41992265..41995947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71930Os.52384.1.A1_at11/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71930OsAffx.2448.1.S1_at1/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71940OsAffx.11821.1.S1_at11/111+42008766..42011226hypothetical protein
LOC_Os01g71950OsAffx.23842.2.S1_x_at11/111+42015240..42017005hypothetical protein
LOC_Os01g71950Os.36178.2.S1_at5/111+42015240..42017005hypothetical protein
LOC_Os01g71950OsAffx.23842.3.S1_x_at4/111+42015240..42017005hypothetical protein
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11821.1.S1_at--490--9971Chr01:42008810..42008834 (25 bp)
TACCACCGCGGATAGGAGGCTGAGT
LOC_Os01g71940
OsAffx.11821.1.S1_at--629--4753Chr08:17451288..17451311 (24 bp)
GCTGAGTTGGTGTGCCAACGTGCAT
NONE
OsAffx.11821.1.S1_at--699--2391Chr01:42009713..42009737 (25 bp)
AAACACGGATAGAGTCAGATCTTAG
LOC_Os01g71940
OsAffx.11821.1.S1_at--71--851Chr01:42009745..42009769 (25 bp)
ATGGACGTCTTCGATCAGTTGGTCA
LOC_Os01g71940
OsAffx.11821.1.S1_at--547--4811Chr01:42009762..42009786 (25 bp)
GTTGGTCAAGGATCTAAACTATTTA
LOC_Os01g71940
OsAffx.11821.1.S1_at--143--371Chr01:42009817..42009841 (25 bp)
ATAATTCTTCTGAGCTCACTTCCAA
LOC_Os01g71940
OsAffx.11821.1.S1_at--160--2071Chr01:42009834..42009858 (25 bp)
ACTTCCAACGCCTCATGAGCATGTG
LOC_Os01g71940
OsAffx.11821.1.S1_at--119--5011Chr01:42009852..42009876 (25 bp)
GCATGTGGTGACTACCATGACATAT
LOC_Os01g71940
OsAffx.11821.1.S1_at--1013--7751Chr01:42011136..42011160 (25 bp)
GGTGATGCGCCCACGGCTCAAGACG
LOC_Os01g71940
OsAffx.11821.1.S1_at--35--4371Chr01:42011146..42011170 (25 bp)
CCACGGCTCAAGACGACGGGCGCAG
LOC_Os01g71940
OsAffx.11821.1.S1_at--341--3471Chr01:42011168..42011192 (25 bp)
CAGGACGAGAGAGTCCCAACCGGCG
LOC_Os01g71940
Target Sequence 
TACCACCGCGGATAGGAGGCTGAGTTGGTGTGCCAACGTGCATTCAACGCCGTGCTATTTGGTGCTGAGATGCAAATGGA
TACAAACACGGATAGAGTCAGATCTTAGGAAGCACATGGACGTCTTCGATCAGTTGGTCAAGGATCTAAACTATTTAGAT
GTGAAACTGGACGATAAAGACAAAGTCATAATTCTTCTGAGCTCACTTCCAACGCCTCATGAGCATGTGGTGACTACCAT
GACATATGGCAAGGTAAAGCATGACAATGATACGGGGACGTCGAAGGGCAAGGAGAAGAGGGTGATGCGCCCACGGCTCA
AGACGACGGGCGCAGGACGAGAGAGTCCCAACCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis