Browse Element(s) Details


Os.25235.1.A1_at

Description gb:CA763020
DB_XREF= gi:25807059
DB_XREF=BR060013A10F04.ab1
CLONE=BR060013A10F04.ab1
TID=Os.25235.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin heavy chain homolog (P0691E06.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5852011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein
LOC_Os01g58550Os.42285.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58550Os.57355.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25235.1.A1_at--284--2932Chr09:11459575..11459597 (22 bp)
AAGGCCTTCGTTCACTGACTATTAC
NONE
Os.25235.1.A1_at--869--2111Chr01:34144088..34144112 (25 bp)
ACATGGGCTGTATCAGTGCTGTCGA
LOC_Os01g58520
Os.25235.1.A1_at--826--2451Chr01:34144051..34144075 (25 bp)
AACAAGCTTCTGTGGCAACGGCAAT
LOC_Os01g58520
Os.25235.1.A1_at--705--731Chr01:34144028..34144052 (25 bp)
ATGTTAACTTCATTATCCCTTCCTC
LOC_Os01g58520
Os.25235.1.A1_at--961--10011Chr01:34143988..34144012 (25 bp)
TAGACCTTCGTTGCTTCCCTGGAAA
LOC_Os01g58520
Os.25235.1.A1_at--178--1711Chr01:34143957..34143981 (25 bp)
ACCAAGCTGGTTGAGTCCGAGTAAG
LOC_Os01g58520
Os.25235.1.A1_at--983--10711Chr01:34143797..34143821 (25 bp)
TTGCATGAGGCATTCCCAAACCTGA
LOC_Os01g58520
Os.25235.1.A1_at--190--1751Chr01:34143773..34143797 (25 bp)
ACCTTCCTGGAGGTCTTCAGGTGTA
LOC_Os01g58520
Os.25235.1.A1_at--1124--131Chr01:34143744..34143768 (25 bp)
ATTAGAATCTTTCCCCTGTGACAAG
LOC_Os01g58520
Os.25235.1.A1_at--584--9731Chr01:34143659..34143683 (25 bp)
TCAAGTGAGTTTCCTTTCGCTGATC
LOC_Os01g58520
Os.25235.1.A1_at--116--6431Chr01:34143638..34143662 (25 bp)
GATCTTTCTTCTCGGTGTCACTCAA
LOC_Os01g58520
Target Sequence 
AAGGCCTTCGTTCACTGACTATTACATGGGCTGTATCAGTGCTGTCGAAAGGAAAGGACCAACAAGCTTCTGTGGCAACG
GCAATGTTAACTTCATTATCCCTTCCTCCAAATCTTAAAAAGCTAGACCTTCGTTGCTTCCCTGGAAAGAAGATACCAAG
CTGGTTGAGTCCGAGTAAGCTACTGGGACTGAAGAAACTGTATTTTACAGGCGGAATGCTAAATACTTTTGGAGATGGGA
GCACGTCAGAGATGTGGAAAGTTGAGATATTGCGCCTGAAATTNTTAGATGACTTAGAGGTGGAATGGACCCAATTGCAT
GAGGCATTCCCAAACCTGACCTTCCTGGAGGTCTTCAGGTGTAGCAAATTAGAATCTTTCCCCTGTGACAAGGATGGAGT
GTGGATGAACTGTGATAAGCAGGAAGTCAGATAAGTAGAATGCAATGTTGAATCAAGTGAGTTTCCTTTCGCTGATCTTT
CTTCTCGGTGTCACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25235.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis