Browse Element(s) Details


Os.42285.1.S1_x_at

Description gb:AU066087
DB_XREF= gi:7273795
DB_XREF=AU066087
CLONE=S2919_1A
TID=Os.42285.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0691E06.10 (P0691E06.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5855011/11methyladenine glycosylase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein
LOC_Os01g58550Os.42285.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58550Os.57355.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58560Os.20602.2.S1_x_at11/111+34173699..34175879hAT family dimerisation domain containing protein
LOC_Os01g58570OsAffx.447.1.S1_at4/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.52609.1.S1_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.2.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.46715.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003824molecular_functioncatalytic activity
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42285.1.S1_x_at--916--6731Chr01:34166801..34166825 (25 bp)
GTTCAGCAAATACGTGTGGGCGTTC
LOC_Os01g58550
Os.42285.1.S1_x_at--687--8711Chr01:34166842..34166866 (25 bp)
TGTCGCCGAGCTACAAATACAGCCG
LOC_Os01g58550
Os.42285.1.S1_x_at--432--2791Chr01:34166868..34166892 (25 bp)
AAGATCCCGGTGAAGACGTCCAAGT
LOC_Os01g58550
Os.42285.1.S1_x_at--353--1891Chr01:34166883..34166907 (25 bp)
ACGTCCAAGTCGGAGTCGATCAGCA
LOC_Os01g58550
Os.42285.1.S1_x_at--972--1991Chr01:34166956..34166980 (25 bp)
ACTCGTTCATGCAGGCCGTCGGGCT
LOC_Os01g58550
Os.42285.1.S1_x_at--783--10491Chr01:34167038..34167062 (25 bp)
TTAACCGATCTGACCATCGCCAAAA
LOC_Os01g58550
Os.42285.1.S1_x_at--687--8831Chr01:34167048..34167072 (25 bp)
TGACCATCGCCAAAACAGTTACCGG
LOC_Os01g58550
Os.42285.1.S1_x_at--436--4411Chr01:34167072..34167096 (25 bp)
GCCAGCTCCCCGAAGGAAGCAAGGA
LOC_Os01g58550
Os.42285.1.S1_x_at--130--2151Chr01:34167155..34167179 (25 bp)
ACAGAACGGGTATTGATTTGCGAGT
LOC_Os01g58550
Os.42285.1.S1_x_at--308--8691Chr01:34167191..34167215 (25 bp)
TGTGCTTGTGTAGATTATTGTCCCT
LOC_Os01g58550
Os.42285.1.S1_x_at--343--6551Chr01:34167203..34167227 (25 bp)
GATTATTGTCCCTAACTAGGCAAGA
LOC_Os01g58550
Target Sequence 
GTTCAGCAAATACGTGTGGGCGTTCNGTAAACAACAANCCGCTGTCGCCGAGCTACAAATACAGCCGGAAGATCCCGGTG
AAGACGTCCAAGTCGGAGTCGATCAGCAAGGACATGGTNCGGCGCGGCTTCCGGTTCGTCGGCCCCACCGTCATCCACTC
GTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGCTCCTCCTCCTCCGCTT
AACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGAAAGAGAA
AAAGTGAGAGATGAGATANCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGT
GTAGATTATTGTCCCTAACTAGGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42285.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis