Browse Element(s) Details


Os.26785.2.S1_at

Description gb:CB670075
DB_XREF= gi:29673800
DB_XREF=OSJNEe02P17.f
CLONE=OSJNEe02P17
TID=Os.26785.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.26785 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172692.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5853011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein
LOC_Os01g58550Os.42285.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58550Os.57355.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58560Os.20602.2.S1_x_at11/111+34173699..34175879hAT family dimerisation domain containing protein
LOC_Os01g58570OsAffx.447.1.S1_at4/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.52609.1.S1_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.2.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.46715.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0005886cellular_componentplasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26785.2.S1_at--565--1431Chr01:34152934..34152958 (25 bp)
AGAACTCGGAGGACAGCAGGTGCTA
LOC_Os01g58530
Os.26785.2.S1_at--356--8451Chr01:34152962..34152986 (25 bp)
GGCCACATGGCCCAGATACAGTAAT
LOC_Os01g58530
Os.26785.2.S1_at--317--9771Chr01:34152986..34153010 (25 bp)
TAATGCCACAACCTCTAACTTATGA
LOC_Os01g58530
Os.26785.2.S1_at--434--6291Chr01:34153048..34153072 (25 bp)
GATGTTGGTTCTTCATACACACTAG
LOC_Os01g58530
Os.26785.2.S1_at--571--2451Chr01:34153081..34153105 (25 bp)
AACAATTGCTATGGCATCCCACTGT
LOC_Os01g58530
Os.26785.2.S1_at--1068--1951Chr01:34153101..34153125 (25 bp)
ACTGTCAGTCATTCTATTGGCTGGA
LOC_Os01g58530
Os.26785.2.S1_at--874--3011Chr01:34153174..34153198 (25 bp)
AATGCTTGTGTCACTCTAGGATCCA
LOC_Os01g58530
Os.26785.2.S1_at--615--1111Chr01:34153206..34153230 (25 bp)
AGTGTTCCACACAATGCAGCGTCTT
LOC_Os01g58530
Os.26785.2.S1_at--247--2251Chr01:34153234..34153258 (25 bp)
AAATTCGCATACCATCAACTTCCTG
LOC_Os01g58530
Os.26785.2.S1_at--758--571Chr01:34153325..34153349 (25 bp)
ATGACTTAATCCGTTTCTGGGTAAT
LOC_Os01g58530
Os.26785.2.S1_at--241--10751Chr01:34153373..34153397 (25 bp)
TTGAATTTCACGAGGCTAGCTGTAT
LOC_Os01g58530
Target Sequence 
AGAACTCGGAGGACAGCAGGTGCTATGTGGCCACATGGCCCAGATACAGTAATAATGCCACAACCTCTAACTTATGAAGA
GTCATATAACCTACTCTGTACAAAGATTGGAAAAGATGTTGGTTCTTCATACACACTAGATTTAATCAACAATTGCTATG
GCATCCCACTGTCAGTCATTCTATTGGCTGGAGTATTGTGTGATGTACCAAGTCAAGATACATTAAATGAGTTGGTCAGA
AATGCTTGTGTCACTCTAGGATCCAAGGTATCAGTGTTCCACACAATGCAGCGTCTTGTGAAATTCGCATACCATCAACT
TCCTGATGCTAATGCAANGCACTGCTTNNTGTACTGCTTACTCTTCCCNTGAGGATCAAGGAATTCCAGTCAATGACTTA
ATCCGTTTCTGGGTAATGGATGGTCTAATCACACAATCTATTGAATTTCACGAGGCTAGCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26785.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis