Browse Element(s) Details


Os.27717.1.S1_a_at

Description gb:AK068219.1
DB_XREF= gi:32978237
TID=Os.27717.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0691E06.3 (P0691E06.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013138A22, full insert sequence.
FL= gb:AK068219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58440Os.50619.1.S1_x_at11/111+34105154..34106470expressed protein
LOC_Os01g58440Os.50619.1.S1_at11/111+34105154..34106470expressed protein
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27717.1.S1_a_at--627--8471Chr01:34130753..34130774 (22 bp)
TGGCTGATGCTTTGGTTGAGGTTAA
LOC_Os01g58470
Os.27717.1.S1_a_at--553--6571Chr01:34131283..34131307 (25 bp)
GATTCCAGAAAACCGTGTTGCCCTT
LOC_Os01g58470
Os.27717.1.S1_a_at--1084--7411Chr01:34131297..34131321 (25 bp)
GTGTTGCCCTTCAGTTGCTTGCGAA
LOC_Os01g58470
Os.27717.1.S1_a_at--218--2371Chr01:34131652..34131676 (25 bp)
AAACCTGGGAAATCTGTCTATGCAA
LOC_Os01g58470
Os.27717.1.S1_a_at--208--8291Chr01:34131691..34131715 (25 bp)
GGCATTGATCCTGAGACAGCTGCTA
LOC_Os01g58470
Os.27717.1.S1_a_at--695--10471Chr01:34131722..34131746 (25 bp)
TTAACATTGATTGGGATTCTGCTGC
LOC_Os01g58470
Os.27717.1.S1_a_at--298--8871Chr01:34131774..34131798 (25 bp)
TGATGAAACTGAAGTGCCCTCCGCA
LOC_Os01g58470
Os.27717.1.S1_a_at--778--7291Chr01:34131787..34131952 (25 bp)
GTGCCCTCCGCAGTGGGATATTCTG
LOC_Os01g58470
Os.27717.1.S1_a_at--239--9491Chr01:34131949..34131973 (25 bp)
TCTGCTCTATATCTGTTAACTGCCT
LOC_Os01g58470
Os.27717.1.S1_a_at--704--10491Chr01:34131964..34131988 (25 bp)
TTAACTGCCTTTCCTGTCATTATTG
LOC_Os01g58470
Os.27717.1.S1_a_at--762--3451Chr01:34131995..34132019 (25 bp)
CAGTCGTGTTGATTCTTTTCTACAA
LOC_Os01g58470
Target Sequence 
TGGCTGATGCTTTGGTTGAGGTTAATGAAGGCCGGATTCCAGAAAACCGTGTTGCCCTTCAGTTGCTTGCGAAGGAGATG
ACTGAATGGCCAGATCTTGAGATGGAAGCTCCAAAAAAGAAGAGTAAACCTGGGAAATCTGTCTATGCAAAGGCTACAGA
TACAGGCATTGATCCTGAGACAGCTGCTAAAAGACTTAACATTGATTGGGATTCTGCTGCTGATTTGGATGATGAAGAGG
AGGAAGATGATGAAACTGAAGTGCCCTCCGCAGTGGGATATTCTGCTCTATATCTGTTAACTGCCTTTCCTGTCATTATT
GGAATATCAGTCGTGTTGATTCTTTTCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27717.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis