Browse Element(s) Details


OsAffx.23839.1.S1_at

Description tigr:9629.m05733
TID=OsAffx.23839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5843011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58400Os.50275.1.S1_at11/111+34067498..34072706Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58410NANA1+34074835..34077087hypothetical protein
LOC_Os01g58420Os.3766.1.S1_at11/111+34093832..34094932AP2 domain containing protein, expressed
LOC_Os01g58430OsAffx.23839.1.S1_at11/111+34097009..34097629hypothetical protein
LOC_Os01g58440Os.50619.1.S1_x_at11/111+34105154..34106470expressed protein
LOC_Os01g58440Os.50619.1.S1_at11/111+34105154..34106470expressed protein
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23839.1.S1_at--105--5091Chr01:34097053..34097077 (25 bp)
GCACCGATTGGCGTTGTTGACAGGT
LOC_Os01g58430
OsAffx.23839.1.S1_at--818--10771Chr01:34097066..34097090 (25 bp)
TTGTTGACAGGTTGGGCCCCAGCGC
LOC_Os01g58430
OsAffx.23839.1.S1_at--770--4531Chr01:34097081..34097105 (25 bp)
GCCCCAGCGCATGCAAGTTCTAGTA
LOC_Os01g58430
OsAffx.23839.1.S1_at--896--8471Chr01:34097141..34097165 (25 bp)
TGGCGAACCAGAAAAGGCGCGTTCT
LOC_Os01g58430
OsAffx.23839.1.S1_at--349--10591Chr01:34097162..34097186 (25 bp)
TTCTCGCGCGTCCTTTCATTGTGTG
LOC_Os01g58430
OsAffx.23839.1.S1_at--233--3611Chr01:34097178..34097202 (25 bp)
CATTGTGTGCCCGTTCTGTGTCTAC
LOC_Os01g58430
OsAffx.23839.1.S1_at--1040--8251Chr01:34097194..34097218 (25 bp)
TGTGTCTACCTTTAATTTAGCCCGG
LOC_Os01g58430
OsAffx.23839.1.S1_at--613--9951Chr01:34097211..34097235 (25 bp)
TAGCCCGGACTCCTTCCAAAATTCG
LOC_Os01g58430
OsAffx.23839.1.S1_at--978--3271Chr01:34097227..34097251 (25 bp)
CAAAATTCGAAGGACTGATCACAGT
LOC_Os01g58430
OsAffx.23839.1.S1_at--895--8211Chr01:34097547..34097571 (25 bp)
GGAATTTGGAATTTCACTCTACGAA
LOC_Os01g58430
OsAffx.23839.1.S1_at--842--2191Chr01:34097571..34097595 (25 bp)
ACAAAGCCTCAACGATACTGCGGTT
LOC_Os01g58430
Target Sequence 
GCACCGATTGGCGTTGTTGACAGGTTGGGCCCCAGCGCATGCAAGTTCTAGTAGTGCAGAGGAGCGGCGGATGGCGTGGC
CGGGGCAGTGGCGAACCAGAAAAGGCGCGTTCTCGCGCGTCCTTTCATTGTGTGCCCGTTCTGTGTCTACCTTTAATTTA
GCCCGGACTCCTTCCAAAATTCGAAGGACTGATCACAGTACTAGAAGGAATTTGGAATTTCACTCTACGAACAAAGCCTC
AACGATACTGCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis