Browse Element(s) Details


OsAffx.20035.1.S1_at

Description tigr:9640.m03874
TID=OsAffx.20035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3968011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39640Os.47453.1.A1_s_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.20034.1.S1_x_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640Os.47453.1.A1_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.16011.1.S1_at1/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein
LOC_Os12g39660Os.9632.1.S2_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39660Os.9632.1.S1_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39670OsAffx.32099.1.S1_at9/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.27541.1.A1_at2/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.50246.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.35524.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39680OsAffx.20035.1.S1_at11/1112+24468227..24471462expressed protein
LOC_Os12g39690OsAffx.7837.1.S1_at11/1112+24472744..24473172hypothetical protein
LOC_Os12g39700NANA12+24481038..24491950retrotransposon protein, putative, unclassified
LOC_Os12g39710Os.47957.1.S1_at11/1112+24493169..24496268expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20035.1.S1_at--798--3691Chr12:24469897..24469921 (25 bp)
CTACCTTCACCTTGCAAGTTAAAAT
LOC_Os12g39680
OsAffx.20035.1.S1_at--565--6751Chr12:24469880..24469904 (25 bp)
GTTAAAATTGGCTCTCTCCTTGCTA
LOC_Os12g39680
OsAffx.20035.1.S1_at--161--9251Chr12:24469864..24469888 (25 bp)
TCCTTGCTACTGCACTGGTTGATAG
LOC_Os12g39680
OsAffx.20035.1.S1_at--719--7011Chr12:24469834..24469858 (25 bp)
GTACTACGATATTCATGTCTCCCAA
LOC_Os12g39680
OsAffx.20035.1.S1_at--671--2231Chr12:24468916..24468940 (25 bp)
ACAATGAGCATTGTGGCCGTCGGTG
LOC_Os12g39680
OsAffx.20035.1.S1_at--790--8471Chr12:24468893..24468917 (25 bp)
TGGCGAGGCCGAAGTTGCACATGCT
LOC_Os12g39680
OsAffx.20035.1.S1_at--787--8911Chr12:24468869..24468893 (25 bp)
TGAGCTCCCACATGACGCGGTGGAC
LOC_Os12g39680
OsAffx.20035.1.S1_at--62--4931Chr12:24468809..24468833 (25 bp)
GCTTGAGCTCATCGAGACGTCGACG
LOC_Os12g39680
OsAffx.20035.1.S1_at--754--7591Chr12:24468784..24468808 (25 bp)
GGGCATACCTCGACACTGTTGATGA
LOC_Os12g39680
OsAffx.20035.1.S1_at--81--5371Chr12:24468332..24468356 (25 bp)
GAAGAGCAACACGTCGAGCAATCTG
LOC_Os12g39680
OsAffx.20035.1.S1_at--303--9371Chr12:24468319..24468343 (25 bp)
TCGAGCAATCTGTGGGATGGCGCAC
LOC_Os12g39680
Target Sequence 
CTACCTTCACCTTGCAAGTTAAAATTGGCTCTCTCCTTGCTACTGCACTGGTTGATAGTGGCAGTACTACGATATTCATG
TCTCCCAAAGTGAAGGTGCCGCGCCAACGCGCCGTGGTGAGGAATCCAACGACGATGGGCGGGAGCGGCGCAACGAGGCT
GCTGCACGCGAGGACGTGGGTGAGCACGACCGCCGAGAGGCCATTCCGACGGAGGCCGTCGAAGGCGAGGCCGCGGCAGC
GAGGTAGGACAATGAGCATTGTGGCCGTCGGTGGCGAGGCCGAAGTTGCACATGCTGAGCTCCCACATGACGCGGTGGAC
CCGGGTGTTGTCGACGGCGAGCCCGACCTGGAGCGGCTTGAGCTCATCGAGACGTCGACGGGGCATACCTCGACACTGTT
GATGACTGGAGCCGTGGAAGAGGCAACAGGAACCGGGATGGGGGTGAAGAGCAACACGTCGAGCAATCTGTGGGATGGCG
CAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis