Browse Element(s) Details


Os.47957.1.S1_at

Description gb:AK066483.1
DB_XREF= gi:32976501
TID=Os.47957.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070M16, full insert sequence.
FL= gb:AK066483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3971011/11expressed protein
LOC_Os07g404342/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39680OsAffx.20035.1.S1_at11/1112+24468227..24471462expressed protein
LOC_Os12g39690OsAffx.7837.1.S1_at11/1112+24472744..24473172hypothetical protein
LOC_Os12g39700NANA12+24481038..24491950retrotransposon protein, putative, unclassified
LOC_Os12g39710Os.47957.1.S1_at11/1112+24493169..24496268expressed protein
LOC_Os12g39720OsAffx.32100.2.S1_s_at11/1112+24497951..24500166expressed protein
LOC_Os12g39730OsAffx.32101.2.S1_at11/1112+24501302..24505155hypothetical protein
LOC_Os12g39730OsAffx.32101.3.S1_x_at6/1112+24501302..24505155hypothetical protein
LOC_Os12g39740OsAffx.25936.7.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_at7/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.2.S1_x_at4/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.5.S1_x_at1/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39750NANA12+24514183..24514455hypothetical protein
LOC_Os12g39760Os.10827.1.S1_x_at11/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39760Os.46055.2.S1_x_at5/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47957.1.S1_at--956--8071Chr12:24495311..24495335 (25 bp)
GGAGCTAGTTGCATTAATCATCTTG
LOC_Os12g39710
Os.47957.1.S1_at--987--7411Chr12:24495335..24495359 (25 bp)
GTGTTTTTGCTGCTTTACCATTTAT
LOC_Os12g39710
Os.47957.1.S1_at--187--6593Chr12:24528656..24528677 (22 bp)
GATTCCAGACTGCAGTACACGTTGA
NONE
Os.47957.1.S1_at--874--9853Chr12:24528668..24528692 (25 bp)
TACACGTTGACGGATTGGCTCGTCT
NONE
Os.47957.1.S1_at--786--3776Chr12:24528691..24528715 (25 bp)
CTCTGCGTCGGCTTATCACGAAGAT
NONE
Os.47957.1.S1_at--732--7234Chr12:24528751..24528775 (25 bp)
GTCGCCGCTGCCTATATAAGAAGCA
NONE
Os.47957.1.S1_at--731--7631Chr12:24496021..24496045 (25 bp)
GGGACGCCGAGGACCATGCATGCTC
LOC_Os12g39710
Os.47957.1.S1_at--110--651Chr12:24496036..24496060 (25 bp)
ATGCATGCTCCCGTGGTAACGATAG
LOC_Os12g39710
Os.47957.1.S1_at--596--36118Chr12:24496097..24496121 (25 bp)
CTTGTGATCGTCGTCTTCAAAATTG
LOC_Os12g39710
Os.47957.1.S1_at--952--3275Chr12:24496114..24496138 (25 bp)
CAAAATTGATTGCTCGCCGAAGGTT
LOC_Os12g39710
Os.47957.1.S1_at--56--8775Chr12:24496184..24496208 (25 bp)
TGTTTTGCCGAAACCTGGTCACAAT
LOC_Os12g39710
Target Sequence 
GGAGCTAGTTGCATTAATCATCTTGTGTTTTTGCTGCTTTACCATTTATTTTGGTGTAGTCGGCTACGGAGTCAAATGAT
GCAGAAGGCAAAGCAAGAGAGCGTAATGCAAAAGAAACAAGTGAATGTAATGCAAGAGATTCCAGACTGCAGTACACGTT
GACGGATTGGCTCGTCTCTGCGTCGGCTTATCACGAAGATTAGCACAGGGCGCTGGAAATTCGGAGGCCGCTTCCGTCGC
CGCTGCCTATATAAGAAGCAGAACCCATCTAGAGCGGGGGACGCCGAGGACCATGCATGCTCCCGTGGTAACGATAGCAC
TTGCTTATTTCTTTTGTTTTATTTTAAGCTGCGCTTGTGATCGTCGTCTTCAAAATTGATTGCTCGCCGAAGGTTGAAGT
TGGTGCAGAGATTTAATGATAACTGTGATATAGGTGGCTTTGTTTTGCCGAAACCTGGTCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis