Browse Element(s) Details


OsAffx.32100.2.S1_s_at

Description tigr:9640.m03878
TID=OsAffx.32100.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3972011/11expressed protein
LOC_Os12g3978011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39690OsAffx.7837.1.S1_at11/1112+24472744..24473172hypothetical protein
LOC_Os12g39700NANA12+24481038..24491950retrotransposon protein, putative, unclassified
LOC_Os12g39710Os.47957.1.S1_at11/1112+24493169..24496268expressed protein
LOC_Os12g39720OsAffx.32100.2.S1_s_at11/1112+24497951..24500166expressed protein
LOC_Os12g39730OsAffx.32101.2.S1_at11/1112+24501302..24505155hypothetical protein
LOC_Os12g39730OsAffx.32101.3.S1_x_at6/1112+24501302..24505155hypothetical protein
LOC_Os12g39740OsAffx.25936.7.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_at7/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.2.S1_x_at4/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.5.S1_x_at1/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39750NANA12+24514183..24514455hypothetical protein
LOC_Os12g39760Os.10827.1.S1_x_at11/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39760Os.46055.2.S1_x_at5/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39770OsAffx.22944.2.S1_s_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39770OsAffx.22944.4.S1_at11/1112+24524789..24525499hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32100.2.S1_s_at--26--10472Chr12:24499159..24499183 (25 bp)
TTACGCGTGCTTAAGGGAGCGCTAT
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--407--4413Chr12:24499194..24499218 (25 bp)
GCCACTGCCAACTACTAATCTTGTT
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--421--3733Chr12:24499205..24499229 (25 bp)
CTACTAATCTTGTTCTCGCACAACA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--926--6712Chr12:24499216..24499240 (25 bp)
GTTCTCGCACAACAGGACCAGATTA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--445--4132Chr12:24499296..24499320 (25 bp)
CGCTTTGGAGGCACTGACGAGTCAA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--981--5772Chr12:24499311..24499335 (25 bp)
GACGAGTCAATATAATGTAGAGCAA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--967--3232Chr12:24499333..24499357 (25 bp)
CAAGCAGTAGAGGAGGGCAACAAGA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--885--3272Chr12:24499350..24499374 (25 bp)
CAACAAGAGAGAGTGCTCACGACAA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--50--6032Chr12:24499358..24499382 (25 bp)
GAGAGTGCTCACGACAAGCACGGAA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--1162--10433Chr12:24499385..24499409 (25 bp)
TTAGAGCAGAGATAGCAGTGTTGCA
LOC_Os12g39720
OsAffx.32100.2.S1_s_at--518--7532Chr12:24499426..24499450 (25 bp)
GTGGAAGATGCCCACTCCAGTGCAC
LOC_Os12g39720
Target Sequence 
TTACGCGTGCTTAAGGGAGCGCTATCGGAGGAAGCGCCACTGCCAACTACTAATCTTGTTCTCGCACAACAGGACCAGAT
TAACCAACACGTCGATCTGCTCCGCACTGCTCAAGACAAGGTGGAGTCATCGTGTGTCGCTTTGGAGGCACTGACGAGTC
AATATAATGTAGAGCAAGCAGTAGAGGAGGGCAACAAGAGAGAGTGCTCACGACAAGCACGGAAAGTTAGAGCAGAGATA
GCAGTGTTGCAAGCAAGACTTCAACAAGTGGAAGATGCCCACTCCAGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32100.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis