Browse Element(s) Details


OsAffx.22944.4.S1_at

Description tigr:9629.m00080
TID=OsAffx.22944.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0176011/11hypothetical protein
LOC_Os12g3977011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22944.4.S1_at--419--9053Chr12:24524908..24524932 (25 bp)
TGCATGGCAAGAAGCAACGCCTCCG
LOC_Os12g39770
OsAffx.22944.4.S1_at--262--10134Chr12:24525385..24525409 (25 bp)
TATGCGGACAGGGTGGGCTAGATAT
LOC_Os12g39770
OsAffx.22944.4.S1_at--49--7754Chr12:24525396..24525420 (25 bp)
GGTGGGCTAGATATGGTCAGCTTTT
LOC_Os12g39770
OsAffx.22944.4.S1_at--28--7594Chr12:24525399..24525423 (25 bp)
GGGCTAGATATGGTCAGCTTTTTCT
LOC_Os12g39770
OsAffx.22944.4.S1_at--442--8314Chr12:24525400..24525424 (25 bp)
GGCTAGATATGGTCAGCTTTTTCTT
LOC_Os12g39770
OsAffx.22944.4.S1_at--1118--4854Chr12:24525401..24525425 (25 bp)
GCTAGATATGGTCAGCTTTTTCTTA
LOC_Os12g39770
OsAffx.22944.4.S1_at--510--3714Chr12:24525402..24525426 (25 bp)
CTAGATATGGTCAGCTTTTTCTTAG
LOC_Os12g39770
OsAffx.22944.4.S1_at--200--1274Chr12:24525404..24525428 (25 bp)
AGATATGGTCAGCTTTTTCTTAGGA
LOC_Os12g39770
OsAffx.22944.4.S1_at--738--6494Chr12:24525405..24525429 (25 bp)
GATATGGTCAGCTTTTTCTTAGGAC
LOC_Os12g39770
OsAffx.22944.4.S1_at--279--274Chr12:24525406..24525430 (25 bp)
ATATGGTCAGCTTTTTCTTAGGACA
LOC_Os12g39770
OsAffx.22944.4.S1_at--1098--10094Chr12:24525407..24525431 (25 bp)
TATGGTCAGCTTTTTCTTAGGACAA
LOC_Os12g39770
Target Sequence 
TGCATGGCAAGAAGCAACGCCTCCGCGAGGCCTGCGACAGCCTCGTCCTCCACTCGCCCATCCTCCTCCCCTTCCGCTGG
TCCGACCTCGACTCCCACCTCTCCTCCCTCCAGTCCTCNATCCACGCCCGCTTCAGCTAGCTGCAGGCCCTCCAGGCTTC
CCGCCCCGCGGCCCCCGCCGCCGCCGGGAGCCATGGCGAGGACGTCCAGGAACAGGGAGAGGACGAAGTGATGGCAGCGG
CGGCNGCGAAGATGGTGCCTCCGTTTACGGTGCTGCAGGTCAAGGAGAGGAGCCCGCGGAGGCGCCGGCATGCGCGAGCA
TGGACGCCACAAGGCTGTCGTCGAATGCCGCCGGCAAGCGTGCCGGCGTCGGGCAAGATGGGTTCGTTCGACCCGGTGGG
ATGGCGGTGCCGGCGGCGGCGGCGAAGATGGCGCCTCCGTCAAAGGTGCAAGTCAAGGAGGAACCAGTCGATTCTGATAT
GCGGACAGGGTGGGCTAGATATGGTCAGCTTTTTCTTAGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22944.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis