Browse Element(s) Details


Os.34815.2.S1_x_at

Description gb:NM_183497.1
DB_XREF= gi:34894121
GEN=P0005A05.26
TID=Os.34815.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.26 (P0005A05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0005A05.26 (P0005A05.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0178011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34815.2.S1_x_at--677--1351Chr01:411713..411737 (25 bp)
AGAGATGTGTCCCTTCCTGAAACAT
LOC_Os01g01780
Os.34815.2.S1_x_at--825--1351Chr01:411790..411814 (25 bp)
AGAGAGATCTATCCTAGCCTTCTTT
LOC_Os01g01780
Os.34815.2.S1_x_at--168--5231Chr01:411885..411909 (25 bp)
GAATATATGACCGTTTGCCACACAG
LOC_Os01g01780
Os.34815.2.S1_x_at--690--3091Chr01:411954..411978 (25 bp)
AATACTGTATTTGTCCCATGGGATA
LOC_Os01g01780
Os.34815.2.S1_x_at--192--451Chr01:412010..412034 (25 bp)
ATCTATTATGAGTGTGTTCCGGTGA
LOC_Os01g01780
Os.34815.2.S1_x_at--604--3951Chr01:412041..412065 (25 bp)
CGGACAATTTTGTGCTTCCATTTGA
LOC_Os01g01780
Os.34815.2.S1_x_at--1133--4631Chr01:412085..412109 (25 bp)
GCGTTCTCTGTGGTCATACCGGAAA
LOC_Os01g01780
Os.34815.2.S1_x_at--589--2911Chr01:412109..412133 (25 bp)
AAGGATGTACCCAAACTGAAGCAGA
LOC_Os01g01780
Os.34815.2.S1_x_at--1084--851Chr01:412163..412187 (25 bp)
ATGGCTATGCAGTCGAATGTTCAAC
LOC_Os01g01780
Os.34815.2.S1_x_at--552--5051Chr01:412192..412216 (25 bp)
GCAGAAGCACTTTATTTGGCATCCA
LOC_Os01g01780
Os.34815.2.S1_x_at--1014--8491Chr01:412208..412232 (25 bp)
TGGCATCCAAATCCCATCAAGTATG
LOC_Os01g01780
Target Sequence 
AGAGATGTGTCCCTTCCTGAAACATTTCTTAGATCACCAAGAAGACCCTTAAGAGGCATTGGTGGAAAACCTGCTGCAGA
GAGATCTATCCTAGCCTTCTTTGCAGGACAGATGCATGGACGAGTTCGACCTGTCCTCCTCCAGTATTGGGGAGGAAAGG
ATGCAGACATGAGAATATATGACCGTTTGCCACACAGAATCACTAGGAGGATGAATTATATTCAGCATATGAAATCAAGT
AAATACTGTATTTGTCCCATGGGATACGAGGTAAACAGCCCAAGAATAGTTGAGGCAATCTATTATGAGTGTGTTCCGGT
GATAATTGCGGACAATTTTGTGCTTCCATTTGATGATGCACTTAATTGGAGTGCGTTCTCTGTGGTCATACCGGAAAAGG
ATGTACCCAAACTGAAGCAGATCTTATTGGCAATTCCTGATGATCAATACATGGCTATGCAGTCGAATGTTCAACGGGTG
CAGAAGCACTTTATTTGGCATCCAAATCCCATCAAGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34815.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis