Browse Element(s) Details


Os.40425.1.A1_x_at

Description gb:AK059460.1
DB_XREF= gi:32969478
TID=Os.40425.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-C09, full insert sequence.
FL= gb:AK059460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0174010/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01700Os.20521.1.S2_at8/111+368633..371215RING-box protein 1, putative, expressed
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40425.1.A1_x_at--690--571Chr01:389324..389348 (25 bp)
ATCCATCCTTCTTGCAGTCATATAT
LOC_Os01g01740
Os.40425.1.A1_x_at--717--5771Chr01:389201..389225 (25 bp)
GACGATCTGCATCTCTGAGAGTATA
LOC_Os01g01740
Os.40425.1.A1_x_at--460--6871Chr01:389181..389205 (25 bp)
GTATAATCTGGATGACGGCTTCGTC
LOC_Os01g01740
Os.40425.1.A1_x_at--217--10631Chr01:389162..389186 (25 bp)
TTCGTCTTCGCCGTGTATGATGTAT
LOC_Os01g01740
Os.40425.1.A1_x_at--999--6911Chr01:389141..389165 (25 bp)
GTATGCACTTTGTTTTTTCAGTTTC
LOC_Os01g01740
Os.40425.1.A1_x_at--551--151Chr01:389086..389110 (25 bp)
ATTATGCGGCAGTAAGGCTTGCTAT
LOC_Os01g01740
Os.40425.1.A1_x_at--190--4871Chr01:389066..389090 (25 bp)
GCTATGATTTAGTATTCCCCTTCTT
LOC_Os01g01740
Os.40425.1.A1_x_at--508--131Chr01:389004..389028 (25 bp)
ATTAATGCCTGCCTCGATCGACTTA
LOC_Os01g01740
Os.40425.1.A1_x_at--798--5611Chr01:388969..388993 (25 bp)
GACAAGCAGCAGTTTTTCTGGTGAT
LOC_Os01g01740
Os.40425.1.A1_x_at--541--7751Chr01:388950..388974 (25 bp)
GGTGATTATCTATCTCTGAATGTCG
LOC_Os01g01740
Os.40425.1.A1_x_at--496--8731Chr01:388885..388909 (25 bp)
TGTAATATAATCGAGCTCTTCCGTC
NONE
Target Sequence 
ATCCATCCTTCTTGCAGTCATATATACCGCCTCCGCATCCGCTGCACCATCACCATCACCAGCATCATAATCATCATCAT
CAACAGNGCCTTCTCCGGTGCTTCCCTCGCTACAGAANCCACCCNGACGATCTGCATCTCTGAGAGTATAATCTGGATGA
CGGCTTCGTCTTCGCCGTGTATGATGTATGCACTTTGTTTTTTCAGTTTCTTTTTTCCTTTTTCAATGCGCCGGCCCCCT
ATTATGCGGCAGTAAGGCTTGCTATGATTTAGTATTCCCCTTCTTTCATTTTTTTTCTGTTTATTATTGACGATTTTCCA
TCATTAATGCCTGCCTCGATCGACTTACTTGAGAGACGACAAGCAGCAGTTTTTCTGGTGATTATCTATCTCTGAATGTC
GTTTTATTTGGGTGGTGGAACAATGGACGAGCATCTGTAATTGTAATATAATCGAGCTCTTCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40425.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis