Browse Element(s) Details


Os.17083.1.S1_at

Description gb:NM_183488.1
DB_XREF= gi:34894103
GEN=P0005A05.17
TID=Os.17083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17083 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) AtATM like protein (P0005A05.17), mRNA.
PROD=AtATM like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0168910/11Phosphatidylinositol 3- and 4-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01700Os.20521.1.S2_at8/111+368633..371215RING-box protein 1, putative, expressed
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0007126biological_processmeiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010212biological_processresponse to ionizing radiation
GO:0043247biological_processtelomere maintenance in response to DNA damage
GO:0000285molecular_function1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17083.1.S1_at--200--6691Chr01:366137..366161 (25 bp)
GTTCCATTTCGCCTGACGAGGGACA
LOC_Os01g01689
Os.17083.1.S1_at--570--2391Chr01:366219..366243 (25 bp)
AAACTCTTTCGGTCATGAGGGCAAA
LOC_Os01g01689
Os.17083.1.S1_at--288--2851Chr03:30662454..30662474 (21 bp)
AAGTCTTCGTCCATGATCCGTTGTA
NONE
Os.17083.1.S1_at--216--9851Chr01:366378..366402 (25 bp)
TAAATGGGCTCTTTCACCACTGAAG
LOC_Os01g01689
Os.17083.1.S1_at--563--1411Chr01:367127..367151 (25 bp)
AGACATTGACTCGTGCTTGGATGAC
LOC_Os01g01689
Os.17083.1.S1_at--311--5151Chr01:367171..367195 (25 bp)
GCAACAAGGATGCAGCCCGAGCTAT
LOC_Os01g01689
Os.17083.1.S1_at--826--5911Chr01:367189..367213 (25 bp)
GAGCTATCCTCCGTGTTAAGCAGAA
LOC_Os01g01689
Os.17083.1.S1_at--863--1291Chr01:367403..367427 (25 bp)
AGATGCGGACCGGTTGTGCCAAATG
LOC_Os01g01689
Os.17083.1.S1_at--243--7911Chr01:367414..367438 (25 bp)
GGTTGTGCCAAATGTTTCCAGGGTG
LOC_Os01g01689
Os.17083.1.S1_at--1033--7891Chr01:367587..367611 (25 bp)
GGTTCTTTAATTGATGCCCTCACTC
LOC_Os01g01689
Os.17083.1.S1_at--774--6351Chr01:367599..367623 (25 bp)
GATGCCCTCACTCAAACAGCAGTAG
LOC_Os01g01689
Target Sequence 
GTTCCATTTCGCCTGACGAGGGACATGATAGATGGCATGGGAGTTACTGGCGTTGAAGGTGTATTTAGAAGGTGTTGTGA
GAAAACTCTTTCGGTCATGAGGGCAAATAAAGAAGCGTTGGTCACTATTATTGAAGTCTTCGTCCATGATCCGTTGTATA
AATGGGCTCTTTCACCACTGAAGGCTTTACAGCGTCAAAAGGAAAGTGAAGACATTGACTCGTGCTTGGATGACTCGCAA
GAGGCTTGCGAGGGCAACAAGGATGCAGCCCGAGCTATCCTCCGTGTTAAGCAGAAACTAGATGGATATGAAGATGGTGA
AATGAGAAGTGTACAGGGCCAGGTGCAACAACTGATACAGGATGCAGTAGATGCGGACCGGTTGTGCCAAATGTTTCCAG
GGTGGGGAGCATGGTTGGTGCTCTCCCACACATACATTCATACTGTATGGGATGGGATGGGTTCTTTAATTGATGCCCTC
ACTCAAACAGCAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis