Browse Element(s) Details


Os.37016.2.S1_x_at

Description gb:NM_183487.1
DB_XREF= gi:34894101
GEN=P0005A05.16
TID=Os.37016.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.16 (P0005A05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0005A05.16 (P0005A05.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0168011/11expressed protein
LOC_Os04g015001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37016.2.S1_x_at--853--5631Chr01:330117..330141 (25 bp)
GACACCGTACTGCATCACAAACAAC
LOC_Os01g01680
Os.37016.2.S1_x_at--217--1471Chr01:330035..330059 (25 bp)
AGAAGGGCGACCTGCGCAAGGACCT
LOC_Os01g01680
Os.37016.2.S1_x_at--838--4351Chr01:329974..329998 (25 bp)
CCACGGCCAGCAAGGGACAAGCATC
LOC_Os01g01680
Os.37016.2.S1_x_at--1082--8132Chr04:337461..337485 (25 bp)
GGACAAGCATCATCACGCTGGCCGG
LOC_Os04g01500
Os.37016.2.S1_x_at--465--3931Chr01:329938..329962 (25 bp)
CGGCGACAACAAGGGCGCATCCATG
LOC_Os01g01680
Os.37016.2.S1_x_at--463--8391Chr01:329925..329949 (25 bp)
GGCGCATCCATGAAGATATCCTCCC
LOC_Os01g01680
Os.37016.2.S1_x_at--23--1151Chr01:329810..329834 (25 bp)
AGTCCATCAACAACTCGCTGCTTCT
LOC_Os01g01680
Os.37016.2.S1_x_at--735--2851Chr01:329721..329745 (25 bp)
AAGTCCAAGTCCAAGACCAAGAGCA
LOC_Os01g01680
Os.37016.2.S1_x_at--1043--3391Chr01:329688..329712 (25 bp)
CAGCAGCATAATGTCGTCGCCGATA
LOC_Os01g01680
Os.37016.2.S1_x_at--737--9411Chr01:329675..329699 (25 bp)
TCGTCGCCGATACCAGCAACAAGGA
LOC_Os01g01680
Os.37016.2.S1_x_at--323--5371Chr01:329650..329674 (25 bp)
GAAGAAGCCCGATAGCAGCCAGGAG
LOC_Os01g01680
Target Sequence 
GACACCGTACTGCATCACAAACAACCACCACCCACGCATCATCATCAGCATCAGCAGCACAAGGTGAAAGATCAGGAGGA
GAAGAAGGGCGACCTGCGCAAGGACCTCAAGGCGGGGCTCGCCGGCATGCTCAGCGCCGCCTCCCACGGCCAGCAAGGGA
CAAGCATCATCACGCTGGCCGGCGACAACAAGGGCGCATCCATGAAGATATCCTCCCCCGCCCCAGGCAGCAAGGGCGCC
GGCGACGACAAGAGAAGCAGTGCGGATGGCAAGGGGGGCGTGAAGGCGATGATCAACAGCAACGTGCAGTCCATCAACAA
CTCGCTGCTTCTCCACAGCTCCTGCAGCGGCGGCGACCTCGGGGTGCACCTCAAGCTCAAGCTCTCCTCAAACTCCAAGT
CCAAGTCCAAGACCAAGAGCAAGGAGAAGCAGCAGCATAATGTCGTCGCCGATACCAGCAACAAGGAGAAGAAGCCCGAT
AGCAGCCAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37016.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis