Browse Element(s) Details


Os.37016.1.A1_at

Description gb:AK061314.1
DB_XREF= gi:32971332
TID=Os.37016.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.16 (P0005A05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C12, full insert sequence.
FL= gb:AK061314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0168011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37016.1.A1_at--435--1571Chr01:329548..329572 (25 bp)
AGCTAACAAGTGATTCTGCAGACAT
LOC_Os01g01680
Os.37016.1.A1_at--1113--2211Chr01:329543..329567 (25 bp)
ACAAGTGATTCTGCAGACATACTAA
LOC_Os01g01680
Os.37016.1.A1_at--258--7411Chr01:329539..329563 (25 bp)
GTGATTCTGCAGACATACTAATGTA
LOC_Os01g01680
Os.37016.1.A1_at--1049--2011Chr01:329523..329547 (25 bp)
ACTAATGTATGTATGTGCTTTGTAC
LOC_Os01g01680
Os.37016.1.A1_at--150--6931Chr01:329517..329541 (25 bp)
GTATGTATGTGCTTTGTACTGATCT
LOC_Os01g01680
Os.37016.1.A1_at--90--6931Chr01:329513..329537 (25 bp)
GTATGTGCTTTGTACTGATCTGATT
LOC_Os01g01680
Os.37016.1.A1_at--240--7331Chr01:329509..329533 (25 bp)
GTGCTTTGTACTGATCTGATTGCCT
LOC_Os01g01680
Os.37016.1.A1_at--859--10251Chr01:329505..329529 (25 bp)
TTTGTACTGATCTGATTGCCTTCGC
LOC_Os01g01680
Os.37016.1.A1_at--752--8751Chr01:329503..329527 (25 bp)
TGTACTGATCTGATTGCCTTCGCCT
LOC_Os01g01680
Os.37016.1.A1_at--485--1971Chr01:329500..329524 (25 bp)
ACTGATCTGATTGCCTTCGCCTCAT
LOC_Os01g01680
Os.37016.1.A1_at--966--71Chr01:329491..329515 (25 bp)
ATTGCCTTCGCCTCATCATAATGAT
LOC_Os01g01680
Target Sequence 
AGCTAACAAGTGATTCTGCAGACATACTAATGTATGTATGTGCTTTGTACTGATCTGATTGCCTTCGCCTCATCATAATG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37016.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis