Browse Element(s) Details


Os.37078.2.S1_at

Description gb:NM_183483.1
DB_XREF= gi:34894093
GEN=P0005A05.12
TID=Os.37078.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37078 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Rer1A protein (AtRer1A) (P0005A05.12), mRNA.
PROD=putative Rer1A protein (AtRer1A)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g016402/11RER1A protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006890biological_processretrograde vesicle-mediated transport, Golgi to ER
GO:0005794cellular_componentGolgi apparatus
GO:0005801cellular_componentGolgi cis-face
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37078.2.S1_at--1086--1511Chr01:318683..318705 (23 bp)
AGCAGCAATTGTTTTGTTCCTCACC
LOC_Os01g01640
Os.37078.2.S1_at--799--10671Chr01:318697..318721 (25 bp)
TTCCTCACCATTTATCCCAAATTGT
LOC_Os01g01640
Os.37078.2.S1_at--634--4171Chr01:318789..319035 (25 bp)
CCCACTCTGTGGTACGGCAAATTGT
NONE
Os.37078.2.S1_at--772--6931Chr01:319034..319058 (25 bp)
GTAGACCCAATTGCACTTGGCGGTG
NONE
Os.37078.2.S1_at--624--3971Chr01:319054..319078 (25 bp)
CGGTGAGCTGCTTTGTTGGAGCAAC
NONE
Os.37078.2.S1_at--82--5111Chr01:319082..319106 (25 bp)
GCACTGTCTGCTTGCGTGGATGAAA
NONE
Os.37078.2.S1_at--482--4751Chr01:319108..319132 (25 bp)
GCTGAGTCATCTGAAGCTAGTGAAC
NONE
Os.37078.2.S1_at--977--8971Chr01:319128..319152 (25 bp)
TGAACATTTTTTCGCTGGCTCGCTG
NONE
Os.37078.2.S1_at--1024--8651Chr01:319155..319179 (25 bp)
TGTGTTTTTTCTCTGATTGTGGCCC
NONE
Os.37078.2.S1_at--318--6611Chr01:319169..319193 (25 bp)
GATTGTGGCCCGGTTGATTATGAAA
NONE
Os.37078.2.S1_at--626--2971Chr01:319193..319307 (25 bp)
AATGACCACTTTCGTTTTCTTGAAG
NONE
Target Sequence 
AGCAGCAATTGTTTTGTTCCTCACCATTTATCCCAAATTGTTCTGCTAGAAATATGGCGGGAAGAAGAGCGCAGGCAGCA
GTTCTTCGAAAGACTGATTGGCAGCCTACCCACTCTGTGGTACGGCAAATTGTAGACCCAATTGCACTTGGCGGTGAGCT
GCTTTGTTGGAGCAACAGGGCACTGTCTGCTTGCGTGGATGAAAAGCTGAGTCATCTGAAGCTAGTGAACATTTTTTCGC
TGGCTCGCTGCGTGTGTTTTTTCTCTGATTGTGGCCCGGTTGATTATGAAAATGACCACTTTCGTTTTCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37078.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis