Browse Element(s) Details


Os.45859.2.S1_x_at

Description gb:NM_183479.1
DB_XREF= gi:34894085
GEN=P0005A05.8
TID=Os.45859.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.8 (P0005A05.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0005A05.8 (P0005A05.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0160010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein
LOC_Os01g01590OsAffx.10250.3.S1_at10/111+290450..291338expressed protein
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45859.2.S1_x_at--338--4971Chr01:301130..301154 (25 bp)
GCATCAACGTCTCGCGGCTGCAGAA
LOC_Os01g01600
Os.45859.2.S1_x_at--671--691Chr01:301169..301193 (25 bp)
ATGAGCCGCTGCAGATATGTTGCAA
LOC_Os01g01600
Os.45859.2.S1_x_at--170--5031Chr01:301213..301237 (25 bp)
GCAGTGGTCGGCCATAGCAGCATAA
LOC_Os01g01600
Os.45859.2.S1_x_at--301--9791Chr01:301235..301259 (25 bp)
TAAGAGATGAGCATGTGCCCTGCCC
LOC_Os01g01600
Os.45859.2.S1_x_at--1003--3351NONE
CACCCTGCAGCTTAATTACTTGGAA
NONE
Os.45859.2.S1_x_at--988--2711Chr01:302342..302366 (25 bp)
AAGCAGGTCAATTTGTGTACCTACA
LOC_Os01g01600
Os.45859.2.S1_x_at--1091--7431Chr01:302356..302380 (25 bp)
GTGTACCTACACATGCAGATGAAGA
LOC_Os01g01600
Os.45859.2.S1_x_at--305--7651Chr01:302422..302446 (25 bp)
GGGAGTTCAACGGAGCACAGATCAT
LOC_Os01g01600
Os.45859.2.S1_x_at--566--4311Chr01:302509..302985 (25 bp)
CCTTCATTCAAGACTTTGAGCGGTC
LOC_Os01g01600
Os.45859.2.S1_x_at--225--10751Chr01:302976..303000 (25 bp)
TTGAGCGGTCCATACCTGAGATCAT
LOC_Os01g01600
Os.45859.2.S1_x_at--232--9031Chr01:303024..303048 (25 bp)
TGCAGGGCAGCACAACAACAACGGG
LOC_Os01g01600
Target Sequence 
GCATCAACGTCTCGCGGCTGCAGAAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCTGCTGCT
GCTGCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCA
AGGACCATCCAACACCCTGCAGCTTAATTACTTGGAAGCTCAATACGTAAGCAATTTAACAAGCAGGTCAATTTGTGTAC
CTACACATGCAGATGAAGAGGAATACGAATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAG
ATCATCAACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATGCTTCCTTCATTCAAGA
CTTTGAGCGGTCCATACCTGAGATCATCCAAGAACAGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45859.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis