Browse Element(s) Details


Os.32454.1.S1_at

Description gb:AK119550.1
DB_XREF= gi:37989173
TID=Os.32454.1
CNT=8
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.32454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative isoflavone reductase homolog IRL (P0005A05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E04, full insert sequence.
FL= gb:AK104189.1 gb:AK104238.1 gb:AK104735.1 gb:AK061325.1 gb:AK119550.1 gb:AK104669.1 gb:AK098946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0165011/11Isoflavone reductase homolog IRL, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32454.1.S1_at--1069--2451Chr01:319967..319991 (25 bp)
AACAAGACGCTGCACATACGGCCGC
LOC_Os01g01650
Os.32454.1.S1_at--482--1431Chr01:319736..319760 (25 bp)
AGAACGTTTTGGTGTCGATCGCGCA
LOC_Os01g01650
Os.32454.1.S1_at--66--1811Chr01:319599..319623 (25 bp)
ACCCTCCTCTAATTCATTTCGTCAT
LOC_Os01g01650
Os.32454.1.S1_at--67--10631Chr01:319582..319606 (25 bp)
TTCGTCATGCATCATATCACCCTAA
LOC_Os01g01650
Os.32454.1.S1_at--1086--371Chr01:319567..319591 (25 bp)
ATCACCCTAAATATGCATGCGCCAA
LOC_Os01g01650
Os.32454.1.S1_at--287--171Chr01:319522..319546 (25 bp)
ATTTTGTTCATTGCTCCATCTTCAG
LOC_Os01g01650
Os.32454.1.S1_at--951--3331Chr01:319489..319513 (25 bp)
CACTGGTTTGTCTGTCATGCATGGA
LOC_Os01g01650
Os.32454.1.S1_at--131--7971Chr01:319467..319491 (25 bp)
GGATCATTTTTACTCTTCAATTCAG
LOC_Os01g01650
Os.32454.1.S1_at--178--3451Chr01:319445..319469 (25 bp)
CAGTTCTGCATTTCAGTTGAGCTGT
LOC_Os01g01650
Os.32454.1.S1_at--568--3391Chr01:319419..319443 (25 bp)
CAGCTGAGTGCCTTGATTTGTACCA
LOC_Os01g01650
Os.32454.1.S1_at--1004--4351Chr01:319397..319421 (25 bp)
CCACCTATCTGCCTTGTTACAAATT
LOC_Os01g01650
Target Sequence 
AACAAGACGCTGCACATACGGCCGCCGGCGAACACCATGTCGCACGACGAGCTGGTGAGCATGTGGGAGAAGAAGACGGG
GAAGAAGCTGGAGAGAGTGTACGTGCCCGAGGACGCCGTGCTCACCAAAATCAAAGAGTTAGAGTACCCGAAGAACGTTT
TGGTGTCGATCGCGCACGCGGCCTACTGTAGAGGGGAGATGAGCTCGCCGCTGGATGATCCGCAGGACGTGGAGGCCACT
CAGCTCTACCCGGAAATCCAATATACAACCGTTGACGAATATCTCAACACCCTCCTCTAATTCATTTCGTCATGCATCAT
ATCACCCTAAATATGCATGCGCCAATAAAAACAAGTCTTGATTTTATTTTGTTCATTGCTCCATCTTCAGTCAGTGTCCA
CTGGTTTGTCTGTCATGCATGGATCATTTTTACTCTTCAATTCAGTTCTGCATTTCAGTTGAGCTGTTCAGCTGAGTGCC
TTGATTTGTACCACCTATCTGCCTTGTTACAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis