Browse Element(s) Details


Os.1000.1.S1_at

Description gb:AY071920.1
DB_XREF= gi:18250363
TID=Os.1000.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.1000 (NCBI UniGene Cluster)
DEF=Oryza sativa isoflavone reductase-like protein mRNA, complete cds.
PROD=isoflavone reductase-like protein
FL= gb:AK109339.2 gb:AY071920.1 gb:AK102701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0166011/11Isoflavone reductase homolog IRL, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1000.1.S1_at--63--2231Chr01:324530..324554 (25 bp)
ACAAGACGGTGAACATACGGCCGGC
LOC_Os01g01660
Os.1000.1.S1_at--963--1811Chr01:324420..324443 (24 bp)
ACGCCGTGCTCAAGCAAATCCAGGA
LOC_Os01g01660
Os.1000.1.S1_at--203--7191Chr01:324277..324301 (25 bp)
GTCGGAGATCCCGTTGAACATCGTG
LOC_Os01g01660
Os.1000.1.S1_at--657--8971Chr01:324263..324287 (25 bp)
TGAACATCGTGCTGTCGATCGCGCA
LOC_Os01g01660
Os.1000.1.S1_at--683--6371Chr01:324247..324271 (25 bp)
GATCGCGCACGCAGGGTACATAAGG
LOC_Os01g01660
Os.1000.1.S1_at--249--3371Chr01:324148..324172 (25 bp)
CACCGTCGATGACTACCTCAACAGG
LOC_Os01g01660
Os.1000.1.S1_at--801--9971Chr01:324135..324159 (25 bp)
TACCTCAACAGGCTCCTCTGAAATA
LOC_Os01g01660
Os.1000.1.S1_at--813--3751Chr01:324120..324144 (25 bp)
CTCTGAAATACATCGATACATCCAT
LOC_Os01g01660
Os.1000.1.S1_at--828--3531Chr01:324102..324126 (25 bp)
CATCCATCATCTTTTATGTGCCAAT
LOC_Os01g01660
Os.1000.1.S1_at--1112--1151Chr01:324067..324091 (25 bp)
AGTCTCTTCCTTAGTAATGTACATG
LOC_Os01g01660
Os.1000.1.S1_at--402--2111Chr01:324047..324071 (25 bp)
ACATGTTCCTGCAAATTTCACACCG
LOC_Os01g01660
Target Sequence 
ACAAGACGGTGAACATACGGCCGGCGAAGAACGCGGTGTCGCACGAGGAGCTGGTGGCGCTGTGGGAGAAGAAGACGGGG
AAGAAGCTGGAGAGGGTGTACGTGCCCGAGGACGCCGTGCTCAAGCAAATCCAGGAGTCGGAGATCCCGTTGAACATCGT
GCTGTCGATCGCGCACGCAGGGTACATAAGGGGGGAGACGACGACGCCGTTGGATCCAGCCACCGCCGTTGAGGCCACCC
AGCTCTTCCCGGACGTCCAGTACACCACCGTCGATGACTACCTCAACAGGCTCCTCTGAAATACATCGATACATCCATCA
TCTTTTATGTGCCAATAAAATAATTAAGTCTCTTCCTTAGTAATGTACATGTTCCTGCAAATTTCACACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis