Browse Element(s) Details


Os.35606.2.S1_x_at

Description gb:NM_183480.1
DB_XREF= gi:34894087
GEN=P0005A05.9
TID=Os.35606.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.9 (P0005A05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0005A05.9 (P0005A05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0161011/11Iron-sulfur cluster assembly accessory protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein
LOC_Os01g01590OsAffx.10250.3.S1_at10/111+290450..291338expressed protein
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35606.2.S1_x_at--541--5351Chr01:305521..305545 (25 bp)
GAAGATCCAGCCAATTCAATCCAAT
LOC_Os01g01610
Os.35606.2.S1_x_at--783--2831Chr01:304146..304170 (25 bp)
AAGTACTAATCGATCCCAAGGCTCT
LOC_Os01g01610
Os.35606.2.S1_x_at--947--531Chr01:304134..304158 (25 bp)
ATCCCAAGGCTCTGATGCATGTCAT
LOC_Os01g01610
Os.35606.2.S1_x_at--727--6331Chr01:304121..304145 (25 bp)
GATGCATGTCATCGGCACCAAGATG
LOC_Os01g01610
Os.35606.2.S1_x_at--896--10691Chr01:304089..304113 (25 bp)
TTGATGACCCGCTAAGGTTTATGAT
LOC_Os01g01610
Os.35606.2.S1_x_at--105--6531Chr01:304067..304091 (25 bp)
GATTTGTGCACAACATTTCCTCCTC
LOC_Os01g01610
Os.35606.2.S1_x_at--567--9531Chr01:304042..304066 (25 bp)
TCTACTTATTACCTCCTTTCACTAC
LOC_Os01g01610
Os.35606.2.S1_x_at--542--10331Chr01:304026..304050 (25 bp)
TTTCACTACCTTACGGAGGCTTCTC
LOC_Os01g01610
Os.35606.2.S1_x_at--587--911Chr01:304010..304034 (25 bp)
AGGCTTCTCCTGTAGGTCTGAATTT
LOC_Os01g01610
Os.35606.2.S1_x_at--298--7411Chr01:303985..304009 (25 bp)
GTGTTCATCAATCCAAATTCCAAAG
LOC_Os01g01610
Os.35606.2.S1_x_at--681--1131Chr01:303957..303981 (25 bp)
AGTGCGGCTGTGGTGAATCTTTCAT
LOC_Os01g01610
Target Sequence 
GAAGATCCAGCCAATTCAATCCAATCCAATCCAATNNNCAGGCTGCGGANNGGAGGNAATCAATTCAATGTCTTCCTCNG
CCGCCTTGGCCTTGGCNTTGAGGAGGGCCACCTCCTCCGNGCACAAGCAGAAGCAGAAGCAGGCCCTCGCCCTAACGGAT
GCCGCCGCCTCTCGAATACGCCAACTCCTCAGCCTCCGCCACAGACCCTACCTGCGNCTTGGCGTCAAAGCACGNGGCTG
NAATGGCCTCTCTTACANCNTCAACTACGCNGATGAAAAAGGCAAGTTTGATGAGGTTGTTGAAGATAAAGGAGTTAAAG
TACTAATCGATCCCAAGGCTCTGATGCATGTCATCGGCACCAAGATGGATTATGNTTGATGACCCGCTAAGGTTTATGAT
TTGTGCACAACATTTCCTCCTCTCTACTTATTACCTCCTTTCACTACCTTACGGAGGCTTCTCCTGTAGGTCTGAATTTG
TGTTCATCAATCCAAATTCCAAAGGGGAGTGCGGCTGTGGTGAATCTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35606.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis