Browse Element(s) Details


OsAffx.24066.1.S1_x_at

Description tigr:9630.m00136
TID=OsAffx.24066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0234011/11Acyltransferase family protein, expressed
LOC_Os12g376001/11Acyltransferase family protein
LOC_Os01g016001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed
LOC_Os02g02330NANA2+774907..775182hypothetical protein
LOC_Os02g02340Os.10244.1.S1_s_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.24066.1.S1_x_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.3584.1.S1_x_at1/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02350Os.14099.1.S1_a_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50684.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50679.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50682.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50680.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50681.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02360Os.8955.1.S1_at10/112+785945..789227expressed protein
LOC_Os02g02370OsAffx.2486.1.S1_at11/112+789597..791081Transcription factor MYB86, putative
LOC_Os02g02380NANA2+795066..796280photomorphogenesis repressor protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24066.1.S1_x_at--281--8092Chr12:23060235..23060256 (22 bp)
GGAGCCGTACCTGCTGCGGTTCTCG
LOC_Os12g37600
OsAffx.24066.1.S1_x_at--540--10591Chr02:776069..776093 (25 bp)
TTCTCGGCGCTGTTCGCGGAGCTGA
LOC_Os02g02340
OsAffx.24066.1.S1_x_at--939--8491Chr02:775976..776000 (25 bp)
TGGAAGTTCCTGGACCCTTACTTCT
LOC_Os02g02340
OsAffx.24066.1.S1_x_at--22--2651Chr02:775850..775874 (25 bp)
AACCACGTGCAGAGGGTGATCGCCA
LOC_Os02g02340
OsAffx.24066.1.S1_x_at--826--972Chr01:300920..301082 (25 bp)
AGGAGCTAGGGTTCCAATGCACCAC
LOC_Os01g01600
OsAffx.24066.1.S1_x_at--726--3012Chr04:13582203..13582222 (20 bp)
AATGCACCACGCTCACCAGGAAGGA
NONE
OsAffx.24066.1.S1_x_at--739--951Chr02:775789..775813 (25 bp)
AGGACAAGTACATGAAGCTCGCCGG
LOC_Os02g02340
OsAffx.24066.1.S1_x_at--232--1651Chr02:775732..775756 (25 bp)
AGCCCAAGGCCAATTGATTAGTCCA
LOC_Os02g02340
OsAffx.24066.1.S1_x_at--500--6551Chr02:775717..775741 (25 bp)
GATTAGTCCATCCATCTTTCTAAAG
LOC_Os02g02340
OsAffx.24066.1.S1_x_at--1064--1311Chr02:775694..775718 (25 bp)
AGATGGCAGGCCACCTACCAGCTGA
LOC_Os02g02340
OsAffx.24066.1.S1_x_at--161--9991Chr02:775679..775703 (25 bp)
TACCAGCTGATTAGGCCACTTGGCG
LOC_Os02g02340
Target Sequence 
GGAGCCGTACCTGCTGCGGTTCTCGGCGCTGTTCGCGGAGCTGACGGCGAGGATCGTGCCGGTGGCGGTGGAGGCGAGGC
AGGGGACGTACTATGGGTCGACGGCGAGGGGGTGGAAGTTCCTGGACCCTTACTTCTTCTACATGAACCCGCGGCCGGGG
TACGAGGTGACGTTCCTGCCGGCGCTGAGGCCGGAGGAGACGTGCGTCGCCGGCGGGAGGAGCGCGGTGGAGGTGGCGAA
CCACGTGCAGAGGGTGATCGCCAAGGAGCTAGGGTTCCAATGCACCACGCTCACCAGGAAGGACAAGTACATGAAGCTCG
CCGGCAACGACGGCCGGGTCGCCGCCGCCGCCGACAAGCCCAAGGCCAATTGATTAGTCCATCCATCTTTCTAAAGATGG
CAGGCCACCTACCAGCTGATTAGGCCACTTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24066.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis