Browse Element(s) Details


Os.50680.1.S1_at

Description gb:AJ490482.1
DB_XREF= gi:27527402
TID=Os.50680.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50680 (NCBI UniGene Cluster)
UG_TITLE=Z118c snoRNA
DEF=Oryza sativa z118c snoRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0235011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed
LOC_Os02g02330NANA2+774907..775182hypothetical protein
LOC_Os02g02340Os.10244.1.S1_s_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.24066.1.S1_x_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.3584.1.S1_x_at1/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02350Os.14099.1.S1_a_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50684.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50679.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50682.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50680.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50681.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02360Os.8955.1.S1_at10/112+785945..789227expressed protein
LOC_Os02g02370OsAffx.2486.1.S1_at11/112+789597..791081Transcription factor MYB86, putative
LOC_Os02g02380NANA2+795066..796280photomorphogenesis repressor protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50680.1.S1_at--109--6911Chr02:784136..784160 (25 bp)
GTATCTGAGCGATGGATCTATCCTC
LOC_Os02g02350
Os.50680.1.S1_at--222--471Chr02:784134..784158 (25 bp)
ATCTGAGCGATGGATCTATCCTCAC
LOC_Os02g02350
Os.50680.1.S1_at--1040--3851Chr02:784132..784156 (25 bp)
CTGAGCGATGGATCTATCCTCACGT
LOC_Os02g02350
Os.50680.1.S1_at--335--5891Chr02:784130..784154 (25 bp)
GAGCGATGGATCTATCCTCACGTGA
LOC_Os02g02350
Os.50680.1.S1_at--1101--1631Chr02:784129..784153 (25 bp)
AGCGATGGATCTATCCTCACGTGAT
LOC_Os02g02350
Os.50680.1.S1_at--1107--4611Chr02:784128..784152 (25 bp)
GCGATGGATCTATCCTCACGTGATT
LOC_Os02g02350
Os.50680.1.S1_at--207--6251Chr02:784126..784150 (25 bp)
GATGGATCTATCCTCACGTGATTAT
LOC_Os02g02350
Os.50680.1.S1_at--577--831Chr02:784125..784149 (25 bp)
ATGGATCTATCCTCACGTGATTATA
LOC_Os02g02350
Os.50680.1.S1_at--136--7971Chr02:784123..784147 (25 bp)
GGATCTATCCTCACGTGATTATACC
LOC_Os02g02350
Os.50680.1.S1_at--930--6411Chr02:784122..784146 (25 bp)
GATCTATCCTCACGTGATTATACCT
LOC_Os02g02350
Os.50680.1.S1_at--871--431Chr02:784121..784145 (25 bp)
ATCTATCCTCACGTGATTATACCTA
LOC_Os02g02350
Target Sequence 
GTATCTGAGCGATGGATCTATCCTCACGTGATTATACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis