Browse Element(s) Details


Os.10244.1.S1_s_at

Description gb:BI810947
DB_XREF= gi:15858149
DB_XREF=K011H12
CLONE=K011H12
TID=Os.10244.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10244 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_191950.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0234011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed
LOC_Os02g02330NANA2+774907..775182hypothetical protein
LOC_Os02g02340Os.10244.1.S1_s_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.24066.1.S1_x_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.3584.1.S1_x_at1/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02350Os.14099.1.S1_a_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50684.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50679.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50682.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50680.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50681.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02360Os.8955.1.S1_at10/112+785945..789227expressed protein
LOC_Os02g02370OsAffx.2486.1.S1_at11/112+789597..791081Transcription factor MYB86, putative
LOC_Os02g02380NANA2+795066..796280photomorphogenesis repressor protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10244.1.S1_s_at--938--8491Chr02:775976..776000 (25 bp)
TGGAAGTTCCTGGACCCTTACTTCT
LOC_Os02g02340
Os.10244.1.S1_s_at--117--4751Chr02:775905..775929 (25 bp)
GCTGAGGCCGGAGGAGACGTGCGTC
LOC_Os02g02340
Os.10244.1.S1_s_at--727--3012Chr04:13582203..13582222 (20 bp)
AATGCACCACGCTCACCAGGAAGGA
NONE
Os.10244.1.S1_s_at--444--51Chr02:775720..775744 (25 bp)
ATTGATTAGTCCATCCATCTTTCTA
LOC_Os02g02340
Os.10244.1.S1_s_at--499--6551Chr02:775717..775741 (25 bp)
GATTAGTCCATCCATCTTTCTAAAG
LOC_Os02g02340
Os.10244.1.S1_s_at--998--9531Chr02:775703..775727 (25 bp)
TCTTTCTAAAGATGGCAGGCCACCT
LOC_Os02g02340
Os.10244.1.S1_s_at--1063--1311Chr02:775694..775718 (25 bp)
AGATGGCAGGCCACCTACCAGCTGA
LOC_Os02g02340
Os.10244.1.S1_s_at--162--9991Chr02:775679..775703 (25 bp)
TACCAGCTGATTAGGCCACTTGGCG
LOC_Os02g02340
Os.10244.1.S1_s_at--869--8811Chr02:775672..775696 (25 bp)
TGATTAGGCCACTTGGCGCCCCTAA
LOC_Os02g02340
Os.10244.1.S1_s_at--21--3611Chr02:775661..775685 (25 bp)
CTTGGCGCCCCTAAGTTGGTATATA
LOC_Os02g02340
Os.10244.1.S1_s_at--258--4571Chr02:775657..775681 (25 bp)
GCGCCCCTAAGTTGGTATATAAATC
LOC_Os02g02340
Target Sequence 
TGGAAGTTCCTGGACCCTTACTTCTTCTACATGAACCCGCGGCCGGGGTACGAGGTGACGTTCCTNCCGGCGCTGAGGCC
GGAGGAGACGTGCGTCGCCGGCGGGAGGAGCNCGGTGGAGNTNNCGAACCACGTNCAGAGGGTGATCGCCNANAGGAGCT
AGGGTTCCNAATGCACCACGCTCACCAGGAAGGACAAGTACATGAAGCTCGCCGGCAACGACGGCCGGNTCGCCGCCGCC
GCCGACAAGCCCAAGGCCNATTGATTAGTCCATCCATCTTTCTAAAGATGGCAGGCCACCTACCAGCTGATTAGGCCACT
TGGCGCCCCTAAGTTGGTATATAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10244.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis