Browse Element(s) Details


OsAffx.2486.1.S1_at

Description tigr:9630.m00140
TID=OsAffx.2486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:F17P19.16
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0237011/11Transcription factor MYB86, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed
LOC_Os02g02330NANA2+774907..775182hypothetical protein
LOC_Os02g02340Os.10244.1.S1_s_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.24066.1.S1_x_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.3584.1.S1_x_at1/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02350Os.14099.1.S1_a_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50684.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50679.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50682.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50680.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50681.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02360Os.8955.1.S1_at10/112+785945..789227expressed protein
LOC_Os02g02370OsAffx.2486.1.S1_at11/112+789597..791081Transcription factor MYB86, putative
LOC_Os02g02380NANA2+795066..796280photomorphogenesis repressor protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2486.1.S1_at--78--1951Chr02:790144..790168 (25 bp)
ACTGGAATTCCTACCTCAAGAAGAG
LOC_Os02g02370
OsAffx.2486.1.S1_at--935--7751Chr02:790119..790143 (25 bp)
GGTGATGCAGGCACAGGGCTCCATC
LOC_Os02g02370
OsAffx.2486.1.S1_at--819--9231Chr02:790100..790124 (25 bp)
TCCATCCCTAACAATCTAGCAGCAG
LOC_Os02g02370
OsAffx.2486.1.S1_at--858--1511Chr02:790074..790098 (25 bp)
AGCAGCTGAGGTCACCTCCATGAGC
LOC_Os02g02370
OsAffx.2486.1.S1_at--994--9031Chr02:789906..789930 (25 bp)
TGCACCTGTCGCTGAGCCATTTGAT
LOC_Os02g02370
OsAffx.2486.1.S1_at--780--8911Chr02:789894..789918 (25 bp)
TGAGCCATTTGATCAGCAGCCCAAG
LOC_Os02g02370
OsAffx.2486.1.S1_at--876--3571Chr02:789889..789913 (25 bp)
CATTTGATCAGCAGCCCAAGAGCTT
LOC_Os02g02370
OsAffx.2486.1.S1_at--1102--971Chr02:789817..789841 (25 bp)
AGGAGAGCTACTCCATCTCGGCGCA
LOC_Os02g02370
OsAffx.2486.1.S1_at--13--5071Chr02:789715..789739 (25 bp)
GCAGCTACGGCGCATTGCAGCAGCA
LOC_Os02g02370
OsAffx.2486.1.S1_at--979--4811Chr02:789646..789670 (25 bp)
GCTACTTTGACCTGCTAAACATGGG
LOC_Os02g02370
OsAffx.2486.1.S1_at--394--3491Chr02:789627..789651 (25 bp)
CATGGGAGACATCTATGGCGGATTT
LOC_Os02g02370
Target Sequence 
ACTGGAATTCCTACCTCAAGAAGAGGGTGATGCAGGCACAGGGCTCCATCCCTAACAATCTAGCAGCAGCAGCAGCTGAG
GTCACCTCCATGAGCACCACCGAGCCACCATCATTGCATCACCATCATCATCACCCTCACCATCATCAGATCAAGAACAG
CAGCGGCAGCACGACCACCTCCCATGACCAAGACGCCAACCTGAGCAGCGGCGGCAGCCATGGCGGCATCTCTGCTCCTG
CACCTGTCGCTGAGCCATTTGATCAGCAGCCCAAGAGCTTCGTCTTCACCGGCGACTGGATGCCGATGTCTGCGGCGGCG
GCGGGGCAGGAGAGCTACTCCATCTCGGCGCAGCACTGGCCGGCGTCCACGGCGAGCTCCGGCAACGTGACGCCGTCGCA
CGGCGGCGCGTTCGGGGACCAGATGAGCGGCAGCTACGGCGCATTGCAGCAGCAGCATCAGAGCTCAGCTGCTGCTGCTC
CAATGGCAGGAGGCGGCGGCTACTTTGACCTGCTAAACATGGGAGACATCTATGGCGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis