Browse Element(s) Details


Os.8955.1.S1_at

Description gb:AK102050.1
DB_XREF= gi:32987259
TID=Os.8955.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082B02, full insert sequence.
FL= gb:AK102050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0236010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed
LOC_Os02g02330NANA2+774907..775182hypothetical protein
LOC_Os02g02340Os.10244.1.S1_s_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.24066.1.S1_x_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.3584.1.S1_x_at1/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02350Os.14099.1.S1_a_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50684.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50679.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50682.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50680.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50681.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02360Os.8955.1.S1_at10/112+785945..789227expressed protein
LOC_Os02g02370OsAffx.2486.1.S1_at11/112+789597..791081Transcription factor MYB86, putative
LOC_Os02g02380NANA2+795066..796280photomorphogenesis repressor protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8955.1.S1_at--552--2291Chr02:787921..787945 (25 bp)
AAATGGGATCACTATGGCCTCACGA
LOC_Os02g02360
Os.8955.1.S1_at--338--4151Chr02:787950..787974 (25 bp)
CGCGTGTGACACTTCGAGGCACAAA
LOC_Os02g02360
Os.8955.1.S1_at--763--911NONE
AGGCACAAAATTTTCCCTCCCAATG
NONE
Os.8955.1.S1_at--777--5251Chr02:788516..788540 (25 bp)
GAATCCCATTTTGCGTGAAGACCAG
LOC_Os02g02360
Os.8955.1.S1_at--591--8991Chr02:788531..788555 (25 bp)
TGAAGACCAGCTTCCCCAGAAGGTT
LOC_Os02g02360
Os.8955.1.S1_at--336--5311Chr02:788549..788573 (25 bp)
GAAGGTTCTGCACCCTAAATCGAAG
LOC_Os02g02360
Os.8955.1.S1_at--760--5671Chr02:788839..788863 (25 bp)
GACATATTTTCGCACAGCGGTGAAA
LOC_Os02g02360
Os.8955.1.S1_at--1154--5591Chr02:788932..788956 (25 bp)
GACAACCACTTTTCTCGCAAGAAGC
LOC_Os02g02360
Os.8955.1.S1_at--30--4211Chr02:788971..788995 (25 bp)
CCCCATTTGTTGCTCTTTTACTATC
LOC_Os02g02360
Os.8955.1.S1_at--300--7131Chr02:789067..789091 (25 bp)
GTCATCCTGTAGACTGAACTCTGAT
LOC_Os02g02360
Os.8955.1.S1_at--469--8291Chr02:789133..789157 (25 bp)
GGCTCAGTTCCATAGTACCATTTTC
LOC_Os02g02360
Target Sequence 
AAATGGGATCACTATGGCCTCACGACGNCCGCGTGTGACACTTCGAGGCACAAAATTTTCCCTCCCAATGCCCCAAGGTG
GAAGAGATGCCATAACTAAGAATCCCATTTTGCGTGAAGACCAGCTTCCCCAGAAGGTTCTGCACCCTAAATCGAAGAAG
TCAAACAAGCAGGACGATGATTTCTTGGGTGTCGAGGACATATTTTCGCACAGCGGTGAAAAGAAAGTACCNCTGAAACC
TCCAGTGAGGAAGGCCCTTGCAATGTTCAGTGGGAAACGGAATCCGAATGACAACCACTTTTCTCGCAAGAAGCATTGAA
TTTCTGTTCCCCATTTGTTGCTCTTTTACTATCATGGTTTTGNTACTGCATTGTTTGACGAGAGAAGTNAGAGTGTATCA
CCTTGATGGNGATTGTGGAGAAAAAAGTCATCCTGTAGACTGAACTCTGATGAAGCATGTAAGCTATACAATTTTGCAGA
ACATCTATGTAAGGCTCAGTTCCATAGTACCATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis