Browse Element(s) Details


Os.37078.1.S1_at

Description gb:AK060999.1
DB_XREF= gi:32971017
TID=Os.37078.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Rer1A protein (AtRer1A) (P0005A05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F05, full insert sequence.
FL= gb:AK060999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0164011/11RER1A protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006890biological_processretrograde vesicle-mediated transport, Golgi to ER
GO:0005794cellular_componentGolgi apparatus
GO:0005801cellular_componentGolgi cis-face
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37078.1.S1_at--1108--4291Chr01:318784..318808 (25 bp)
GCCTACCCACTCTGGTAGGAAAAAT
LOC_Os01g01640
Os.37078.1.S1_at--467--7611Chr01:318814..318838 (25 bp)
GGGCAAGAAGATACAGTCGATGATA
LOC_Os01g01640
Os.37078.1.S1_at--385--3451Chr01:318827..318851 (25 bp)
CAGTCGATGATATTTGATGTGCTAC
LOC_Os01g01640
Os.37078.1.S1_at--822--8671Chr01:318844..318868 (25 bp)
TGTGCTACATACCAATTGTAATATT
LOC_Os01g01640
Os.37078.1.S1_at--299--10211Chr01:318865..318889 (25 bp)
TATTTCATTCATATCTAGAGCTAGA
LOC_Os01g01640
Os.37078.1.S1_at--1126--7931Chr01:318891..318915 (25 bp)
GGATATTCACTTGTATTTCAGACTC
LOC_Os01g01640
Os.37078.1.S1_at--332--10331Chr01:318906..318930 (25 bp)
TTTCAGACTCTGGTTCACGGTTTAA
LOC_Os01g01640
Os.37078.1.S1_at--704--5671Chr01:318911..318935 (25 bp)
GACTCTGGTTCACGGTTTAAATTGA
LOC_Os01g01640
Os.37078.1.S1_at--1031--10771Chr01:318932..318956 (25 bp)
TTGATATTGTGGTAGAATGCTTTCT
LOC_Os01g01640
Os.37078.1.S1_at--290--5271Chr01:318946..318970 (25 bp)
GAATGCTTTCTTGGATGGGTATATA
LOC_Os01g01640
Os.37078.1.S1_at--835--6251Chr01:318959..318983 (25 bp)
GATGGGTATATAGTGTGACTCGTTA
LOC_Os01g01640
Target Sequence 
GCCTACCCACTCTGGTAGGAAAAATGGAAGGGGCAAGAAGATACAGTCGATGATATTTGATGTGCTACATACCAATTGTA
ATATTTCATTCATATCTAGAGCTAGAAGGATATTCACTTGTATTTCAGACTCTGGTTCACGGTTTAAATTGATATTGTGG
TAGAATGCTTTCTTGGATGGGTATATAGTGTGACTCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis