Browse Element(s) Details


Os.996.1.S1_at

Description gb:AK066907.1
DB_XREF= gi:32976925
TID=Os.996.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.10 (P0005A05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092I02, full insert sequence.
FL= gb:AK066907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0162010/11Ribokinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein
LOC_Os01g01590OsAffx.10250.3.S1_at10/111+290450..291338expressed protein
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006169biological_processadenosine salvage
GO:0004001molecular_functionadenosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.996.1.S1_at--1127--7271Chr01:307081..307105 (25 bp)
GTGGTGACCCTAGCTTCTAAGGGAT
LOC_Os01g01620
Os.996.1.S1_at--915--471Chr01:306790..306814 (25 bp)
ATCTGTTTGCGAGCGGGTTCCTGTA
LOC_Os01g01620
Os.996.1.S1_at--321--1431Chr01:306667..306691 (25 bp)
AGAACTGGCAGTGGATGTACAAGCA
LOC_Os01g01620
Os.996.1.S1_at--138--1311Chr01:306643..306667 (25 bp)
AGATGAACGCCAGTGGCCTGCTGCT
LOC_Os01g01620
Os.996.1.S1_at--235--3831Chr01:306623..306647 (25 bp)
CTGCTCCCTGACCTCAAGAACTGAA
LOC_Os01g01620
Os.996.1.S1_at--256--2871Chr01:306587..306611 (25 bp)
AAGGGCTTGCCTTTTACTTGTCAAG
LOC_Os01g01620
Os.996.1.S1_at--778--8771Chr01:306509..306533 (25 bp)
TGTTAGTTAGACCTCCTATGCTCGG
LOC_Os01g01620
Os.996.1.S1_at--545--5291Chr01:306444..306468 (25 bp)
GAATGGATGGTGGTAACCTGCACTG
LOC_Os01g01620
Os.996.1.S1_at--678--1971Chr01:306423..306447 (25 bp)
ACTGCACTACAAGTCTCGCTGATTA
LOC_Os01g01620
Os.996.1.S1_at--428--2851Chr01:306413..306437 (25 bp)
AAGTCTCGCTGATTATTCAATTTGC
LOC_Os01g01620
Os.996.1.S1_at--690--3851Chr01:306322..306346 (25 bp)
CTGAACGTGTTTGTTGTCAGCTGTC
NONE
Target Sequence 
GTGGTGACCCTAGCTTCTAAGGGATGCATAGCGAAGCATGGGAAGCAGGTGGTTCAAGTGGCGGCAACCGGGGAGAGTAA
TGCGGTGGACGCGACGGGGGCGGGGGATCTGTTTGCGAGCGGGTTCCTGTACGGGTTGGTGAAAGGGCTGGCATTGGAGG
AGTGCTGCAAGGTAGGGGCGTGCAGCGGTGGGTCAGTGGTGAGGGCTCTGGGCGGGGAGGTGAGGCCGGAGAACTGGCAG
TGGATGTACAAGCAGATGAACGCCAGTGGCCTGCTGCTCCCTGACCTCAAGAACTGAANAAAAANAAAAAAGGGCTTGCC
TTTTACTTGTCAAGCTTCCAAGAAAGAAACAAAGATTCAGACCATGGNCATTGATGGCTTGATTGTTTGTTAGTTAGACC
TCCTATGCTCGGTTTCTTTCTTTGTTTCTTAATTTGTGAGATGAGATGAATGGAATGGATGGTGGTAACCTGCACTGCAC
TACAAGTCTCGCTGATTATTCAATTTGCTCGAGAAAACTCATATATATATATATANNGTATAATAAAGTAACATAAAAGT
TTGGATGTATNAAAATCTGAACGTGTTTGTTGTCAGCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis