Browse Element(s) Details


Os.35606.1.S1_at

Description gb:AK066672.1
DB_XREF= gi:32976690
TID=Os.35606.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.9 (P0005A05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071F21, full insert sequence.
FL= gb:AK066672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0161010/11Iron-sulfur cluster assembly accessory protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein
LOC_Os01g01590OsAffx.10250.3.S1_at10/111+290450..291338expressed protein
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed
LOC_Os01g01640Os.37078.1.S1_at11/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01640Os.37078.2.S1_at2/111+316551..319007RER1A protein, putative, expressed
LOC_Os01g01650Os.32454.1.S1_at11/111+319370..320725Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01660Os.1000.1.S1_at11/111+323930..325252Isoflavone reductase homolog IRL, putative, expressed
LOC_Os01g01670OsAffx.23032.1.S1_at11/111+328432..329076expressed protein
LOC_Os01g01680Os.37016.2.S1_x_at11/111+329469..330491expressed protein
LOC_Os01g01680Os.37016.1.A1_at11/111+329469..330491expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35606.1.S1_at--126--9871NONE
TACACCCTCAACTACGCTGATGAAA
NONE
Os.35606.1.S1_at--667--671Chr01:304008..304110 (25 bp)
ATGACCCGCTAAGGTCTGAATTTGT
LOC_Os01g01610
Os.35606.1.S1_at--359--7971Chr01:303916..303940 (25 bp)
GGATCTACATCTTGAATAACGGATA
LOC_Os01g01610
Os.35606.1.S1_at--820--6971Chr01:303879..303903 (25 bp)
GTACGTGAGGTAAACAGAGCTAAAT
LOC_Os01g01610
Os.35606.1.S1_at--384--3111Chr01:303857..303881 (25 bp)
AATATGTCGAGGCTTCAGCTACCAC
LOC_Os01g01610
Os.35606.1.S1_at--1002--3391Chr01:303842..303866 (25 bp)
CAGCTACCACTTTTCTGCTTTATAG
LOC_Os01g01610
Os.35606.1.S1_at--439--8191Chr01:303800..303824 (25 bp)
GGAAGTACATAGCTCAACAGTGGTT
LOC_Os01g01610
Os.35606.1.S1_at--885--5191Chr01:303766..303790 (25 bp)
GCAATTGTGTGAACCCACCTCAACT
LOC_Os01g01610
Os.35606.1.S1_at--436--5431Chr01:303756..303780 (25 bp)
GAACCCACCTCAACTGTGTTCTTTA
LOC_Os01g01610
Os.35606.1.S1_at--269--6931Chr01:303716..303740 (25 bp)
GTATGTGTTCTTGGTTTCTGTTGTT
LOC_Os01g01610
Os.35606.1.S1_at--663--9471Chr01:303700..303724 (25 bp)
TCTGTTGTTTGTTTACATGTGATTA
LOC_Os01g01610
Target Sequence 
TACACCCTCAACTACGCTGATGAAAAAGGCAAGTTTGATGAGGTTGTTGAAGATAAAGGAGTTAAAGTACTAATCGATCC
CAAGGCTCTGATGCATGTCATCGGCACCAAGATGGATTATGTTGATGACCCGCTAAGGTCTGAATTTGTGTTCATCAATC
CAAATTCCAAAGGGGAGTGCGGCTGTGGTGAATCTTTCATGACTACAAGCAGCAAGGGATCTACATCTTGAATAACGGAT
AGTGATGGGGGTAGTACGTGAGGTAAACAGAGCTAAATATGTCGAGGCTTCAGCTACCACTTTTCTGCTTTATAGCTTAT
TATTATTACATTGGAAGTACATAGCTCAACAGTGGTTGTAATAGATGCAATTGTGTGAACCCACCTCAACTGTGTTCTTT
ACATTGGGGGGGGGGGGGTATGTGTTCTTGGTTTCTGTTGTTTGTTTACATGTGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis