Browse Element(s) Details


Os.27860.3.S1_at

Description gb:NM_191136.1
DB_XREF= gi:34909355
GEN=P0638D12.10
TID=Os.27860.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0638D12.10 (P0638D12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0638D12.10 (P0638D12.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g114901/11Zinc finger, C3HC4 type family protein
LOC_Os01g015801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11450OsAffx.19542.3.S1_x_at3/111+6159989..6163187retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11460Os.37798.1.S1_at8/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11460OsAffx.19509.1.S1_at1/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11470NANA1+6178965..6179318hypothetical protein
LOC_Os01g11480OsAffx.1984.1.S1_at11/111+6179927..6180666Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11490OsAffx.11009.1.S1_at11/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11490Os.27860.3.S1_at1/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11500OsAffx.23199.1.S1_at11/111+6185320..6186021Zinc finger, C3HC4 type family protein
LOC_Os01g11510OsAffx.23200.1.S1_at11/111+6188733..6190547SRF-type transcription factor family protein
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11530OsAffx.10261.2.A1_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.10626.4.A1_s_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530OsAffx.31752.1.S1_at2/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.40531.1.A1_x_at1/111+6205940..6207490hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27860.3.S1_at--1141--5711NONE
GACTGCTCTCCGGAAGCACCTTAGA
NONE
Os.27860.3.S1_at--129--4811NONE
GCTCTCCGGAAGCACCTTAGAAATC
NONE
Os.27860.3.S1_at--808--4251Chr01:31199185..31199206 (22 bp)
CCGGAAGCACCTTAGAAATCAAGAA
NONE
Os.27860.3.S1_at--461--8831Chr01:31199221..31199245 (25 bp)
TGATTCAATTATCCGTCAACGTCAT
NONE
Os.27860.3.S1_at--295--2491Chr01:31199250..31199274 (25 bp)
AACAGCAGAACCAAATCACGGATCA
NONE
Os.27860.3.S1_at--415--9691Chr01:31199265..31199289 (25 bp)
TCACGGATCAAAATTCTTCTGCCAT
NONE
Os.27860.3.S1_at--661--6451Chr01:31199270..31199294 (25 bp)
GATCAAAATTCTTCTGCCATATTAG
NONE
Os.27860.3.S1_at--163--10572Chr10:9396290..9396312 (23 bp)
TTCTTCTGCCATATTAGACATTCAA
NONE
Os.27860.3.S1_at--632--10031Chr01:31199292..31199316 (25 bp)
TAGACATTCAACAAAATAACAGGAG
NONE
Os.27860.3.S1_at--989--971Chr01:31199312..31199336 (25 bp)
AGGAGAACCAAACTGACTCACCGCC
NONE
Os.27860.3.S1_at--1062--4133Chr01:31199422..31199446 (25 bp)
CGCTGCTCGTCGGAGGATGAGGCCG
NONE
Target Sequence 
GACTGCTCTCCGGAAGCACCTTAGAAATCAAGAAGAGGAAATTTACATTGATTCAATTATCCGTCAACGTCATCAACAAC
AGCAGAACCAAATCACGGATCAAAATTCTTCTGCCATATTAGACATTCAACAAAATAACAGGAGAACCAAACTGACTCAC
CGCCAACACCATCATCAATCTCCCTCTCAGCCGTGGTCACCTTCGATCCACACCTACCATGCGGCCATCAAGGAGAAGGG
GGAGGCCGCCGCTGCTCGTCGGAGGATGAGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27860.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis