Browse Element(s) Details


OsAffx.11009.1.S1_at

Description tigr:9629.m01104
TID=OsAffx.11009.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1149011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11450OsAffx.19542.3.S1_x_at3/111+6159989..6163187retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11460Os.37798.1.S1_at8/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11460OsAffx.19509.1.S1_at1/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11470NANA1+6178965..6179318hypothetical protein
LOC_Os01g11480OsAffx.1984.1.S1_at11/111+6179927..6180666Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11490OsAffx.11009.1.S1_at11/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11490Os.27860.3.S1_at1/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11500OsAffx.23199.1.S1_at11/111+6185320..6186021Zinc finger, C3HC4 type family protein
LOC_Os01g11510OsAffx.23200.1.S1_at11/111+6188733..6190547SRF-type transcription factor family protein
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11530OsAffx.10261.2.A1_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.10626.4.A1_s_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530OsAffx.31752.1.S1_at2/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.40531.1.A1_x_at1/111+6205940..6207490hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11009.1.S1_at--1002--7311Chr01:6182879..6182903 (25 bp)
GTGCTCGTGCTCTGCGCCATACGGT
LOC_Os01g11490
OsAffx.11009.1.S1_at--83--9091Chr01:6182872..6182896 (25 bp)
TGCTCTGCGCCATACGGTGCTACCG
LOC_Os01g11490
OsAffx.11009.1.S1_at--644--3571Chr01:6182862..6182886 (25 bp)
CATACGGTGCTACCGCATGCGGCGC
LOC_Os01g11490
OsAffx.11009.1.S1_at--849--3911Chr01:6182836..6182860 (25 bp)
CGGTGAACCGGGTCACGGTGGCAGC
LOC_Os01g11490
OsAffx.11009.1.S1_at--839--4591Chr01:6182786..6182810 (25 bp)
GCGGCCGGGAACGTCACCAACAAGA
LOC_Os01g11490
OsAffx.11009.1.S1_at--624--9131Chr01:6182684..6182708 (25 bp)
TGCGACCGGTGGGAGTGCTCGATAT
LOC_Os01g11490
OsAffx.11009.1.S1_at--238--4811Chr01:6182668..6182692 (25 bp)
GCTCGATATGCCTCTGCGCGGTGGC
LOC_Os01g11490
OsAffx.11009.1.S1_at--156--3491Chr01:6182628..6182652 (25 bp)
CAGGCAGCTGCCCAGGTGCATGCAC
LOC_Os01g11490
OsAffx.11009.1.S1_at--179--8611Chr01:6182533..6182557 (25 bp)
TGGTGGTCAACAAACCGCCGGACGA
LOC_Os01g11490
OsAffx.11009.1.S1_at--221--971Chr01:6182509..6182533 (25 bp)
AGGACGACGGCAGGTGCGCGGAGAC
LOC_Os01g11490
OsAffx.11009.1.S1_at--673--3451Chr01:6182499..6182523 (25 bp)
CAGGTGCGCGGAGACGCCGGAGGAT
LOC_Os01g11490
Target Sequence 
GTGCTCGTGCTCTGCGCCATACGGTGCTACCGCATGCGGCGCGCGGTGAACCGGGTCACGGTGGCAGCCGCGTCGGCGGC
GGCGGCGGCGGCGGCGGCCGGGAACGTCACCAACAAGAAGCGGCCGGCGCCGGGCCTCGGCGAGGACGCCATCGCCGCGC
TGCCCAAGTTCGAGTACCGCGGCACGGGCGACGAGTGCGACCGGTGGGAGTGCTCGATATGCCTCTGCGCGGTGGCCGAC
GGCGAGGTGGCCAGGCAGCTGCCCAGGTGCATGCACCTCTTCCACCGGGGCTGCGTCGACATGTGGCTCGTCGCGCACAC
CACCTGCCCCGTGTGCCGGGCGGAGGTGGTGGTCAACAAACCGCCGGACGAGGACGACGGCAGGTGCGCGGAGACGCCGG
AGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis