Browse Element(s) Details


OsAffx.1984.1.S1_at

Description tigr:9629.m01103
TID=OsAffx.1984.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1148011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11450OsAffx.19542.3.S1_x_at3/111+6159989..6163187retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11460Os.37798.1.S1_at8/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11460OsAffx.19509.1.S1_at1/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11470NANA1+6178965..6179318hypothetical protein
LOC_Os01g11480OsAffx.1984.1.S1_at11/111+6179927..6180666Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11490OsAffx.11009.1.S1_at11/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11490Os.27860.3.S1_at1/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11500OsAffx.23199.1.S1_at11/111+6185320..6186021Zinc finger, C3HC4 type family protein
LOC_Os01g11510OsAffx.23200.1.S1_at11/111+6188733..6190547SRF-type transcription factor family protein
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1984.1.S1_at--4--4071Chr01:6180421..6180445 (25 bp)
CGAGACGTGTTTGTCGTAATGGCGA
LOC_Os01g11480
OsAffx.1984.1.S1_at--362--1911Chr01:6180417..6180441 (25 bp)
ACGTGTTTGTCGTAATGGCGACGGT
LOC_Os01g11480
OsAffx.1984.1.S1_at--864--2811Chr01:6180372..6180396 (25 bp)
AAGTTGTGAGCGCACTGATCGGCCA
LOC_Os01g11480
OsAffx.1984.1.S1_at--865--8911Chr01:6180366..6180390 (25 bp)
TGAGCGCACTGATCGGCCAGTACTA
LOC_Os01g11480
OsAffx.1984.1.S1_at--413--1971Chr01:6180359..6180383 (25 bp)
ACTGATCGGCCAGTACTACGACGGG
LOC_Os01g11480
OsAffx.1984.1.S1_at--217--471Chr01:6180355..6180379 (25 bp)
ATCGGCCAGTACTACGACGGGCTGG
LOC_Os01g11480
OsAffx.1984.1.S1_at--94--5911Chr01:6180325..6180349 (25 bp)
GAGCTCGTGGTGTTCTCCCTCGCCA
LOC_Os01g11480
OsAffx.1984.1.S1_at--795--9411Chr01:6180297..6180321 (25 bp)
TCGTCCTGCGGTACGCCGCGGTGCT
LOC_Os01g11480
OsAffx.1984.1.S1_at--628--7831Chr01:6180288..6180312 (25 bp)
GGTACGCCGCGGTGCTCTACGCGAA
LOC_Os01g11480
OsAffx.1984.1.S1_at--909--9531Chr01:6180273..6180297 (25 bp)
TCTACGCGAACCACCTGGTCGACAG
LOC_Os01g11480
OsAffx.1984.1.S1_at--121--8611Chr01:6180258..6180282 (25 bp)
TGGTCGACAGCCTGAGCGAGCTCCA
LOC_Os01g11480
Target Sequence 
CGAGACGTGTTTGTCGTAATGGCGACGGTGGGCGCCGTGGACGGCGTTGAAGTTGTGAGCGCACTGATCGGCCAGTACTA
CGACGGGCTGGCGCTGGAGCTCGTGGTGTTCTCCCTCGCCATCGTCGTCCTGCGGTACGCCGCGGTGCTCTACGCGAACC
ACCTGGTCGACAGCCTGAGCGAGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis