Browse Element(s) Details


Os.37798.1.S1_at

Description gb:AK108311.1
DB_XREF= gi:32993520
TID=Os.37798.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.5 (OSJNBa0038J17.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F12, full insert sequence.
FL= gb:AK108311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g114608/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11450OsAffx.19542.3.S1_x_at3/111+6159989..6163187retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11460Os.37798.1.S1_at8/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11460OsAffx.19509.1.S1_at1/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11470NANA1+6178965..6179318hypothetical protein
LOC_Os01g11480OsAffx.1984.1.S1_at11/111+6179927..6180666Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11490OsAffx.11009.1.S1_at11/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11490Os.27860.3.S1_at1/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11500OsAffx.23199.1.S1_at11/111+6185320..6186021Zinc finger, C3HC4 type family protein
LOC_Os01g11510OsAffx.23200.1.S1_at11/111+6188733..6190547SRF-type transcription factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37798.1.S1_at--406--8711Chr01:6169184..6169208 (25 bp)
TGTCTAGCTTGCTGCCTACCAGTCG
LOC_Os01g11460
Os.37798.1.S1_at--1121--4271Chr01:6169123..6169147 (25 bp)
CCTCGGGAAGCGTCAGCGCATGATT
LOC_Os01g11460
Os.37798.1.S1_at--133--2711Chr01:6169085..6169109 (25 bp)
AAGCTACATGCTACAGTGACGAGAC
LOC_Os01g11460
Os.37798.1.S1_at--575--1111Chr01:6169071..6169095 (25 bp)
AGTGACGAGACTAGAGTGAAACCTA
LOC_Os01g11460
Os.37798.1.S1_at--345--9991Chr01:6169048..6169072 (25 bp)
TAGCTAGGATCGACGTCGTAGATCG
LOC_Os01g11460
Os.37798.1.S1_at--591--7211Chr01:6169034..6169058 (25 bp)
GTCGTAGATCGAGAGGCAGCCTAAT
LOC_Os01g11460
Os.37798.1.S1_at--1110--6191Chr01:6169022..6169046 (25 bp)
GAGGCAGCCTAATCAACCAAGATTT
LOC_Os01g11460
Os.37798.1.S1_at--875--2811Chr01:6169004..6169028 (25 bp)
AAGATTTTATTCGTTCGTGCTCAAG
LOC_Os01g11460
Os.37798.1.S1_at--504--9991Chr01:6168967..6168991 (25 bp)
TAGTACGTGTACATACCGTTTTCCT
NONE
Os.37798.1.S1_at--330--3571Chr01:6168956..6168980 (25 bp)
CATACCGTTTTCCTTATTATAGTGA
NONE
Os.37798.1.S1_at--623--6251Chr01:6168933..6168957 (25 bp)
GATGGGTACTACTATATGACCGAAA
NONE
Target Sequence 
TGTCTAGCTTGCTGCCTACCAGTCGCCNCNGTACGTGCCTCCGGATGGACCNGCCGCGCCCNGCCTCGGGAAGCGTCAGC
GCATGATTGAGGAAGTAGCTAAAGCTACATGCTACAGTGACGAGACTAGAGTGAAACCTAGCTAGGATCGACGTCGTAGA
TCGAGAGGCAGCCTAATCAACCAAGATTTTATTCGTTCGTGCTCAAGTAGCTTTGTACNGTAGTACGTGTACATACCGTT
TTCCTTATTATAGTGATGGGTACTACTATATGACCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis