Browse Element(s) Details


OsAffx.23200.1.S1_at

Description tigr:9629.m01106
TID=OsAffx.23200.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1151011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11460Os.37798.1.S1_at8/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11460OsAffx.19509.1.S1_at1/111+6168972..6169988Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11470NANA1+6178965..6179318hypothetical protein
LOC_Os01g11480OsAffx.1984.1.S1_at11/111+6179927..6180666Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11490OsAffx.11009.1.S1_at11/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11490Os.27860.3.S1_at1/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11500OsAffx.23199.1.S1_at11/111+6185320..6186021Zinc finger, C3HC4 type family protein
LOC_Os01g11510OsAffx.23200.1.S1_at11/111+6188733..6190547SRF-type transcription factor family protein
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11530OsAffx.10261.2.A1_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.10626.4.A1_s_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530OsAffx.31752.1.S1_at2/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.40531.1.A1_x_at1/111+6205940..6207490hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0004672molecular_functionprotein kinase activity
GO:0005199molecular_functionstructural constituent of cell wall
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23200.1.S1_at--870--8511Chr01:6189958..6189982 (25 bp)
TGGAAGCTCACATGCCACTGGAGGC
LOC_Os01g11510
OsAffx.23200.1.S1_at--677--8011Chr01:6189977..6190001 (25 bp)
GGAGGCTCCATGGATCCAAGAACCA
LOC_Os01g11510
OsAffx.23200.1.S1_at--450--2751Chr01:6189994..6190018 (25 bp)
AAGAACCATTTCTCATGCCTGATCA
LOC_Os01g11510
OsAffx.23200.1.S1_at--421--2611Chr01:6190043..6190067 (25 bp)
AACGCCATTGCTGATGCCAGTGGGA
LOC_Os01g11510
OsAffx.23200.1.S1_at--818--9371Chr01:6190084..6190108 (25 bp)
TCGAGGCTCCATTGTTCCAAGAATC
LOC_Os01g11510
OsAffx.23200.1.S1_at--638--9651Chr01:6190124..6190148 (25 bp)
TCAGAAATCTGTGCATGCTCTTCCT
LOC_Os01g11510
OsAffx.23200.1.S1_at--1072--5031Chr01:6190160..6190184 (25 bp)
GCAGATGCCTTTGGAAGCTCACCTG
LOC_Os01g11510
OsAffx.23200.1.S1_at--79--8391Chr01:6190311..6190335 (25 bp)
GGCGACGCAGGCTTTGCAGCTATAG
LOC_Os01g11510
OsAffx.23200.1.S1_at--91--4471Chr01:6190374..6190398 (25 bp)
GCCTCTCCTCTCTATGATGGACAGA
LOC_Os01g11510
OsAffx.23200.1.S1_at--1144--6231Chr01:6190389..6190413 (25 bp)
GATGGACAGATCTACTTCGGCTCCG
LOC_Os01g11510
OsAffx.23200.1.S1_at--760--7912Chr01:6190415..6190439 (25 bp)
GGTTGATAACATGGGCGTTCCTCCT
LOC_Os01g11510
Target Sequence 
TGGAAGCTCACATGCCACTGGAGGCTCCATGGATCCAAGAACCATTTCTCATGCCTGATCAAGCACCGGTCCATGCTCCT
CCACCAACGCCATTGCTGATGCCAGTGGGAGCTGATCACTTCCCACTCGAGGCTCCATTGTTCCAAGAATCACTTATAAT
GGCTGATCAGAAATCTGTGCATGCTCTTCCTCCACCTCCATTGCAGATGCCTTTGGAAGCTCACCTGCCACCTGCAGCAC
AAGAGTATAACCAAGATCTGGCCGTGCAGCAGCAACCCCAAGAGTATGAAAACTATGACTACATGTTTGAGAACGTGGGG
CTCTCACAGGCACAGCCGGTGGCCGCTGGCGCCGGCGACGCAGGCTTTGCAGCTATAGGCAACGACGACAACCCGTTCGG
CTACCAACAGTTGGTTGCCTCTCCTCTCTATGATGGACAGATCTACTTCGGCTCCGGGGTTGATAACATGGGCGTTCCTC
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis