Browse Element(s) Details


OsAffx.10250.3.S1_at

Description tigr:9629.m00062
TID=OsAffx.10250.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0159010/11expressed protein
LOC_Os04g402794/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01520Os.9784.1.S1_at11/111+266948..271886Transferase family protein, expressed
LOC_Os01g01530NANA1+273087..274683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein
LOC_Os01g01590OsAffx.10250.3.S1_at10/111+290450..291338expressed protein
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10250.3.S1_at--318--1671Chr01:290527..290551 (25 bp)
AGCCGCCTTTACTCATGAACCGTGC
LOC_Os01g01590
OsAffx.10250.3.S1_at--482--674Chr04:23732610..23732634 (25 bp)
ATGAACCGTGCCCAGACGCCGATGA
LOC_Os04g40279
OsAffx.10250.3.S1_at--536--5753Chr11:19614182..19614206 (25 bp)
GACGGGTTCGTCCTGACTAGATCCA
NONE
OsAffx.10250.3.S1_at--142--8955Chr11:19614195..19614219 (25 bp)
TGACTAGATCCAGATCCCTCGGGAT
NONE
OsAffx.10250.3.S1_at--968--4375Chr08:2046977..2047001 (25 bp)
CCAAGAGAGGCTTGAGCTCGGCAGC
NONE
OsAffx.10250.3.S1_at--362--7611NONE
GGGTCGGACTCCAGAAAGTCTCCTC
NONE
OsAffx.10250.3.S1_at--348--2331Chr01:291210..291234 (25 bp)
AAAGTCTCCTCGAGTGTTGATGCCC
LOC_Os01g01590
OsAffx.10250.3.S1_at--1030--9371Chr01:291219..291243 (25 bp)
TCGAGTGTTGATGCCCATTTCCAGG
LOC_Os01g01590
OsAffx.10250.3.S1_at--95--5871Chr01:291250..291274 (25 bp)
GAGCCACAGTTTCTGCCACAACGAT
LOC_Os01g01590
OsAffx.10250.3.S1_at--257--2591Chr01:291269..291293 (25 bp)
AACGATGTGGCAGGCCAAAGGCTCT
LOC_Os01g01590
OsAffx.10250.3.S1_at--879--4371Chr01:291283..291307 (25 bp)
CCAAAGGCTCTAGGGCCATGCTCAA
LOC_Os01g01590
Target Sequence 
AGCCGCCTTTACTCATGAACCGTGCCCAGACGCCGATGACGGCGACGGGTTCGTCCTGACTAGATCCAGATCCCTCGGGA
TCCACCAAGAGAGGCTTGAGCTCGGCAGCGGCGACGAGGGGGTCGGACTCCAGAAAGTCTCCTCGAGTGTTGATGCCCAT
TTCCAGGGCCTCCGAGCCACAGTTTCTGCCACAACGATGTGGCAGGCCAAAGGCTCTAGGGCCATGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10250.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis