Browse Element(s) Details


Os.9784.1.S1_at

Description gb:AK121535.1
DB_XREF= gi:37991158
TID=Os.9784.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative benzoyltransferase (P0436E04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031D14, full insert sequence.
FL= gb:AK121535.1 gb:AK071797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0152011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01484Os.809.1.A1_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.37961.1.S1_s_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.27455.1.S1_x_at2/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01500OsAffx.23027.2.S1_x_at11/111+256409..256711hypothetical protein
LOC_Os01g01500OsAffx.23027.2.S1_at11/111+256409..256711hypothetical protein
LOC_Os01g01510Os.810.1.S1_at11/111+258332..265273expressed protein
LOC_Os01g01510Os.810.2.S1_x_at10/111+258332..265273expressed protein
LOC_Os01g01510Os.810.3.S1_x_at5/111+258332..265273expressed protein
LOC_Os01g01520Os.9784.1.S1_at11/111+266948..271886Transferase family protein, expressed
LOC_Os01g01530NANA1+273087..274683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein
LOC_Os01g01590OsAffx.10250.3.S1_at10/111+290450..291338expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9784.1.S1_at--1027--4491Chr01:267214..267238 (25 bp)
GCCGTACCCGTACTAGTGGACAAGC
LOC_Os01g01520
Os.9784.1.S1_at--402--8151Chr01:267197..267221 (25 bp)
GGACAAGCAGGACCACGACAACCAG
LOC_Os01g01520
Os.9784.1.S1_at--578--5851Chr01:267187..267211 (25 bp)
GACCACGACAACCAGCTCGTGCGTG
LOC_Os01g01520
Os.9784.1.S1_at--293--3791Chr01:267172..267196 (25 bp)
CTCGTGCGTGCCCATCATCAACATG
LOC_Os01g01520
Os.9784.1.S1_at--313--571Chr01:267145..267169 (25 bp)
ATCCTCGCCTAGTAGCTTCTTAATT
LOC_Os01g01520
Os.9784.1.S1_at--632--4271Chr01:267138..267162 (25 bp)
CCTAGTAGCTTCTTAATTAATGCAC
LOC_Os01g01520
Os.9784.1.S1_at--224--3091Chr01:267054..267078 (25 bp)
AATACAATTATCTCTGCTTTACAAC
LOC_Os01g01520
Os.9784.1.S1_at--1079--4871Chr01:267039..267063 (25 bp)
GCTTTACAACTCAAATTTTGTCCAA
LOC_Os01g01520
Os.9784.1.S1_at--309--2051Chr01:267011..267035 (25 bp)
ACTTATTATCACTATGGAATGCCAA
LOC_Os01g01520
Os.9784.1.S1_at--992--9751Chr01:266978..267002 (25 bp)
TAATCACTTTCTATTTCTATTGAGA
LOC_Os01g01520
Os.9784.1.S1_at--1160--713Chr04:27122199..27122219 (21 bp)
ATGTTTTTAACAGTTCGAGTGGACG
NONE
Target Sequence 
GCCGTACCCGTACTAGTGGACAAGCAGGACCACGACAACCAGCTCGTGCGTGCCCATCATCAACATGACATCCTCGCCTA
GTAGCTTCTTAATTAATGCACTACTAATTAACTACTATTTCCATCCCAAAATATAATAATTTTTACTACCTCCGTTCCAA
AATACAATTATCTCTGCTTTACAACTCAAATTTTGTCCAAAATACTTATTATCACTATGGAATGCCAATTATCATATAAT
CACTTTCTATTTCTATTGAGAAAATGTTTTTAACAGTTCGAGTGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis