Browse Element(s) Details


Os.809.1.A1_at

Description gb:CB635145
DB_XREF= gi:29630136
DB_XREF=OSIIEb15D04.r
CLONE=OSIIEb15D04
TID=Os.809.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.809 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:P48732 (A.thaliana) DET1_ARATH Light-mediated development protein DET1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0148411/11Light-mediated development protein DET1, putative, expressed
LOC_Os01g298206/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed
LOC_Os01g01484Os.809.1.A1_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.37961.1.S1_s_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.27455.1.S1_x_at2/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01500OsAffx.23027.2.S1_x_at11/111+256409..256711hypothetical protein
LOC_Os01g01500OsAffx.23027.2.S1_at11/111+256409..256711hypothetical protein
LOC_Os01g01510Os.810.1.S1_at11/111+258332..265273expressed protein
LOC_Os01g01510Os.810.2.S1_x_at10/111+258332..265273expressed protein
LOC_Os01g01510Os.810.3.S1_x_at5/111+258332..265273expressed protein
LOC_Os01g01520Os.9784.1.S1_at11/111+266948..271886Transferase family protein, expressed
LOC_Os01g01530NANA1+273087..274683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.809.1.A1_at--351--10092Chr01:17038965..17038989 (25 bp)
TAGGTCCCTTTGATCCACTCCTATG
LOC_Os01g29820
Os.809.1.A1_at--848--4172Chr01:17038970..17038994 (25 bp)
CCCTTTGATCCACTCCTATGAATAA
LOC_Os01g29820
Os.809.1.A1_at--225--53Chr03:3978116..3978156 (24 bp)
ATTGTTATTTAGTTCTTGACATTTC
NONE
Os.809.1.A1_at--975--10672Chr01:17039038..17039062 (25 bp)
TTCCTTGTCCCTCGTTTTCAGCTGA
LOC_Os01g29820
Os.809.1.A1_at--453--8712Chr01:17039043..17039067 (25 bp)
TGTCCCTCGTTTTCAGCTGATTTCA
LOC_Os01g29820
Os.809.1.A1_at--676--4192Chr01:17039046..17039070 (25 bp)
CCCTCGTTTTCAGCTGATTTCAGCG
LOC_Os01g29820
Os.809.1.A1_at--500--10351Chr01:245616..245640 (25 bp)
TTTAGGTTCTCCTTGCTTCGAGTAT
LOC_Os01g01484
Os.809.1.A1_at--673--1011Chr01:245613..245637 (25 bp)
AGGTTCTCCTTGCTTCGAGTATGCT
LOC_Os01g01484
Os.809.1.A1_at--1005--9491Chr01:245609..245633 (25 bp)
TCTCCTTGCTTCGAGTATGCTGGAA
LOC_Os01g01484
Os.809.1.A1_at--838--10711Chr01:245604..245628 (25 bp)
TTGCTTCGAGTATGCTGGAATGTAC
LOC_Os01g01484
Os.809.1.A1_at--344--4712Chr01:17039711..17039735 (25 bp)
GCTGGAATGTACATTTTGTAGGAAT
NONE
Target Sequence 
TAGGTCCCTTTGATCCACTCCTATGAATAAATNNNNGTTNNTTTTTTTTCTTATTGTTATTTAGTTCTTGACATTTCCTT
GTCCCTCGTTTTCAGCTGATTTCAGCGATTGATNGGCACNGACACTGTACAGAGCATCCAATAAAATTNATATCAGTGAA
NCAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTNTGGTGCTTNTGACAGCAGGGCAAAAAGAATNTNTT
CCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTNTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACAT
TTCAGGAGATAGAANGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTNTGAGCGGTGCACAGCTCAGTAAAAATTT
TGGCCGCNTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATNNNNAANGGAAAAATGTGGNTTTAGGTTCTCCTTGC
TTCGAGTATGCTGGAATGTACATTTTGTAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.809.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis