Browse Element(s) Details


OsAffx.23027.2.S1_at

Description tigr:9629.m00052
TID=OsAffx.23027.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0150011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed
LOC_Os01g01484Os.809.1.A1_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.37961.1.S1_s_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.27455.1.S1_x_at2/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01500OsAffx.23027.2.S1_x_at11/111+256409..256711hypothetical protein
LOC_Os01g01500OsAffx.23027.2.S1_at11/111+256409..256711hypothetical protein
LOC_Os01g01510Os.810.1.S1_at11/111+258332..265273expressed protein
LOC_Os01g01510Os.810.2.S1_x_at10/111+258332..265273expressed protein
LOC_Os01g01510Os.810.3.S1_x_at5/111+258332..265273expressed protein
LOC_Os01g01520Os.9784.1.S1_at11/111+266948..271886Transferase family protein, expressed
LOC_Os01g01530NANA1+273087..274683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23027.2.S1_at--767--7171Chr01:256473..256497 (25 bp)
GTCGAGCAGGGAGGCTTCGTTTCGT
LOC_Os01g01500
OsAffx.23027.2.S1_at--624--3951Chr01:256475..256499 (25 bp)
CGAGCAGGGAGGCTTCGTTTCGTCC
LOC_Os01g01500
OsAffx.23027.2.S1_at--823--1831Chr01:256560..256584 (25 bp)
ACGCGGGATCCAACAGTCGTCTCGT
LOC_Os01g01500
OsAffx.23027.2.S1_at--426--4671Chr01:256562..256586 (25 bp)
GCGGGATCCAACAGTCGTCTCGTCT
LOC_Os01g01500
OsAffx.23027.2.S1_at--880--7651Chr01:256564..256588 (25 bp)
GGGATCCAACAGTCGTCTCGTCTGG
LOC_Os01g01500
OsAffx.23027.2.S1_at--185--7971Chr01:256565..256589 (25 bp)
GGATCCAACAGTCGTCTCGTCTGGC
LOC_Os01g01500
OsAffx.23027.2.S1_at--1--6371Chr01:256566..256590 (25 bp)
GATCCAACAGTCGTCTCGTCTGGCG
LOC_Os01g01500
OsAffx.23027.2.S1_at--219--591Chr01:256567..256591 (25 bp)
ATCCAACAGTCGTCTCGTCTGGCGC
LOC_Os01g01500
OsAffx.23027.2.S1_at--1037--3931Chr01:256634..256658 (25 bp)
CGGCGGCTCAGAGGTGGAGTGAGGC
LOC_Os01g01500
OsAffx.23027.2.S1_at--1150--8871Chr01:256653..256677 (25 bp)
TGAGGCGGCGCGTCACTGAGGTCAC
LOC_Os01g01500
OsAffx.23027.2.S1_at--245--911Chr01:256655..256679 (25 bp)
AGGCGGCGCGTCACTGAGGTCACCG
LOC_Os01g01500
Target Sequence 
GTCGAGCAGGGAGGCTTCGTTTCGTCCTCTGGCAGATGGCGCTCAACATGTGGTACGTCGAGCTCGCCGTCGGCGGCAGC
AAGGTGCACGCGGGATCCAACAGTCGTCTCGTCTGGCGCCACACGCCAGCGGCGGCGAGGGCGGGGGAGGGGAAAGGAAG
GCGGCGGCTCAGAGGTGGAGTGAGGCGGCGCGTCACTGAGGTCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23027.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis