Browse Element(s) Details


Os.37961.1.S1_s_at

Description gb:AK100613.1
DB_XREF= gi:32985822
TID=Os.37961.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative tDET1 protein (P0436E04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107M18, full insert sequence.
FL= gb:AK058683.1 gb:AK100613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0148411/11Light-mediated development protein DET1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed
LOC_Os01g01484Os.809.1.A1_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.37961.1.S1_s_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.27455.1.S1_x_at2/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01500OsAffx.23027.2.S1_x_at11/111+256409..256711hypothetical protein
LOC_Os01g01500OsAffx.23027.2.S1_at11/111+256409..256711hypothetical protein
LOC_Os01g01510Os.810.1.S1_at11/111+258332..265273expressed protein
LOC_Os01g01510Os.810.2.S1_x_at10/111+258332..265273expressed protein
LOC_Os01g01510Os.810.3.S1_x_at5/111+258332..265273expressed protein
LOC_Os01g01520Os.9784.1.S1_at11/111+266948..271886Transferase family protein, expressed
LOC_Os01g01530NANA1+273087..274683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37961.1.S1_s_at--878--3372Chr01:17039125..17039149 (25 bp)
CAGCCAAATGTTGTCAAATTCAAGA
NONE
Os.37961.1.S1_s_at--660--2232Chr01:17039140..17039160 (21 bp)
AAATTCAAGATAAAACCAGGTTCAG
NONE
Os.37961.1.S1_s_at--793--9572Chr01:17039468..17039492 (25 bp)
TCTTGTTTCACCCATTTTTCCCTCT
NONE
Os.37961.1.S1_s_at--679--10212Chr01:17039502..17039526 (25 bp)
TATTCAGCAGACATATATGCAGCCA
NONE
Os.37961.1.S1_s_at--242--272Chr01:17039516..17039540 (25 bp)
ATATGCAGCCAACTGTTGTCAATTT
NONE
Os.37961.1.S1_s_at--638--6632Chr01:17039530..17039554 (25 bp)
GTTGTCAATTTACATTTCAGGAGAT
NONE
Os.37961.1.S1_s_at--19--6532Chr01:17039560..17039584 (25 bp)
GATATTGCCGTTCCCTCAATTGTAT
NONE
Os.37961.1.S1_s_at--84--4513Chr02:18870504..18870523 (20 bp)
GCCGTTCCCTCAATTGTATTTGTAA
NONE
Os.37961.1.S1_s_at--701--4672Chr01:17039600..17039624 (25 bp)
GCGGTGCACAGCTCAGTAAAAATTT
NONE
Os.37961.1.S1_s_at--128--2152Chr01:17039607..17039631 (25 bp)
ACAGCTCAGTAAAAATTTTGGCCGC
NONE
Os.37961.1.S1_s_at--308--6932Chr01:17039637..17039661 (25 bp)
GTAGGATGTTTTATCGGCAAAGATC
NONE
Target Sequence 
CAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTC
CTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATT
TCAGGAGATAGANCGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTT
GGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37961.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis