Browse Element(s) Details


Os.27455.1.S1_x_at

Description gb:AK072999.1
DB_XREF= gi:32983022
TID=Os.27455.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (B1109A06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149N01, full insert sequence.
FL= gb:AK072999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2982011/11expressed protein
LOC_Os01g014842/11Light-mediated development protein DET1, putative, expressed
LOC_Os02g243701/11hypothetical protein
LOC_Os01g292901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29770NANA1+17010747..17011072hypothetical protein
LOC_Os01g29780Os.31845.2.S1_x_at1/111+17014563..17016473retrotransposon protein, putative, unclassified
LOC_Os01g29790OsAffx.7834.1.S1_at10/111+17016884..17020481hypothetical protein
LOC_Os01g29800Os.27490.2.S1_at3/111+17025093..17025710hypothetical protein
LOC_Os01g29800OsAffx.11234.1.S1_x_at1/111+17025093..17025710hypothetical protein
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27455.1.S1_x_at--176--6251Chr01:17035932..17035956 (25 bp)
GATGGTTGAACAGCTGCAGTTTTTG
LOC_Os01g29820
Os.27455.1.S1_x_at--221--5032Chr01:17035947..17035971 (25 bp)
GCAGTTTTTGGATCGTCATCACCTA
LOC_Os01g29820
Os.27455.1.S1_x_at--714--7972Chr01:17035956..17035980 (25 bp)
GGATCGTCATCACCTATTTATGCAG
LOC_Os01g29820
Os.27455.1.S1_x_at--1070--611Chr01:17035975..17035999 (25 bp)
ATGCAGTTTTTGGATCGTTGTTAAC
LOC_Os01g29820
Os.27455.1.S1_x_at--189--4391Chr01:17036053..17036077 (25 bp)
CCAAGATGGAAGTCGTTCTGGAAAC
LOC_Os01g29820
Os.27455.1.S1_x_at--124--1011Chr01:17036084..17036108 (25 bp)
AGGATCTGCTAAAGTCCGCATCTGC
LOC_Os01g29820
Os.27455.1.S1_x_at--1113--4951Chr01:17036101..17036125 (25 bp)
GCATCTGCTATGACCGGGATCGGCA
LOC_Os01g29820
Os.27455.1.S1_x_at--356--29113Chr12:14332906..14332926 (21 bp)
AAGGTTAGCCGATTGAGCCGAGTCC
NONE
Os.27455.1.S1_x_at--918--6594Chr10:12132400..12132424 (25 bp)
GATTGAGCCGAGTCCGACAATGTGA
NONE
Os.27455.1.S1_x_at--945--6092Chr01:17036160..17036184 (25 bp)
GAGTCCGACAATGTGACGCGGTACA
LOC_Os01g29820
Os.27455.1.S1_x_at--169--1831Chr01:17036175..17036199 (25 bp)
ACGCGGTACACATTGTCGGGTTGAG
LOC_Os01g29820
Target Sequence 
GATGGTTGAACAGCTGCAGTTTTTGGATCGTCATCACCTATTTATGCAGTTTTTGGATCGTTGTTAACAACCAAATTTGG
TAATTTCAGTATCAGAGATGGAGATAAAATTGAGGCGGAATCCAAGATGGAAGTCGTTCTGGAAACAGAGCAAGGATCTG
CTAAAGTCCGCATCTGCTATGACCGGGATCGGCAGAGTCCGAGTTGGACAAGGTTAGCCGATTGAGCCGAGTCCGACAAT
GTGACGCGGTACACATTGTCGGGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27455.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis