Browse Element(s) Details


OsAffx.11260.1.S1_at

Description tigr:9629.m02868
TID=OsAffx.11260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2986010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed
LOC_Os01g29880NANA1+17065927..17067780Zinc knuckle family protein
LOC_Os01g29890OsAffx.23456.1.S1_at11/111+17070047..17070319hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11260.1.S1_at--1117--4591Chr01:17057309..17057333 (25 bp)
GCGACGTGACGCCACACCGGAGCTA
LOC_Os01g29860
OsAffx.11260.1.S1_at--215--1911Chr01:17057306..17057330 (25 bp)
ACGTGACGCCACACCGGAGCTACAG
LOC_Os01g29860
OsAffx.11260.1.S1_at--402--1511Chr01:17056925..17056945 (21 bp)
AGCAGCGGAGCCGACGTCACGAAAT
LOC_Os01g29860
OsAffx.11260.1.S1_at--683--8071NONE
GGAGCCGACGTCACGAAATCAAGTG
NONE
OsAffx.11260.1.S1_at--410--7091Chr01:17056157..17056176 (20 bp)
GTCACGAAATCAAGTGATACGCACT
LOC_Os01g29860
OsAffx.11260.1.S1_at--627--1111Chr01:17056145..17056169 (25 bp)
AGTGATACGCACTATTAGAAAAAGC
LOC_Os01g29860
OsAffx.11260.1.S1_at--679--8432Chr12:16126277..16126301 (25 bp)
GGCCAAAAAGGGTCTTCGCAAGCGG
NONE
OsAffx.11260.1.S1_at--792--9291Chr01:17056075..17056099 (25 bp)
TCCGCCTGTAAACAAACGACTATGA
LOC_Os01g29860
OsAffx.11260.1.S1_at--390--9814Chr07:6243427..6243926 (25 bp)
TAAACAAACGACTATGAAGATCGCC
NONE
OsAffx.11260.1.S1_at--1025--6371Chr01:17056049..17056073 (25 bp)
GATCGCCGGTCTTCTCATGCGGAGC
LOC_Os01g29860
OsAffx.11260.1.S1_at--784--3951Chr01:17056043..17056067 (25 bp)
CGGTCTTCTCATGCGGAGCGGCCGT
LOC_Os01g29860
Target Sequence 
GCGACGTGACGCCACACCGGAGCTACAGCTACCCGCGGGCGTCCTCGGCGTCGGCGTCCGGGTGCGGCGGAGGCGGAAAC
AGCAACCCGCTGGTGGCACCGCCGCCCGCGGCCGAGCAGAGGGCGCTGATGAGGACGCCTGGCCCCGGCGGGGAGAGCGC
GAGGCGGCCGGTGTTCCGCGGCAAGTCGCTGACGGACGACATCCTGATGCGGCGGTTCGTCGTCGACGAGGAGGCCACGC
GGCGGCGCAACGAGATGGAGGTGATCCGGAGCCGCCACGCGGCCGCCGCCAAGCGGCGGCGCCTCGGCCCCAGCCCGCTC
CGCCGGATGGCCCTAGCGGAATCGGAGTCGGAGGCCGACGACGATGAGGAGGAGACGACGACGACGGAAGCAGCGGAGCC
GACGTCACGAAATCAAGTGATACGCACTATTAGAAAAAGCATTATCGCAAGCGGCCAAAAAGGGTCTTCGCAAGCGGGGC
GGCCGTCCGCCTGTAAACAAACGACTATGAAGATCGCCGGTCTTCTCATGCGGAGCGGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis