Browse Element(s) Details


OsAffx.7834.1.S1_at

Description tigr:9629.m02862
TID=OsAffx.7834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2979010/11hypothetical protein
LOC_Os04g210601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29750Os.41695.15.S1_s_at9/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.5.S1_x_at8/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.4.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.2.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.3.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29760NANA1+17000663..17005278retrotransposon protein, putative, unclassified, expressed
LOC_Os01g29770NANA1+17010747..17011072hypothetical protein
LOC_Os01g29780Os.31845.2.S1_x_at1/111+17014563..17016473retrotransposon protein, putative, unclassified
LOC_Os01g29790OsAffx.7834.1.S1_at10/111+17016884..17020481hypothetical protein
LOC_Os01g29800Os.27490.2.S1_at3/111+17025093..17025710hypothetical protein
LOC_Os01g29800OsAffx.11234.1.S1_x_at1/111+17025093..17025710hypothetical protein
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7834.1.S1_at--614--1291Chr01:17018794..17018818 (25 bp)
AGATGCCTGGCCTGGTGAAACTCAA
LOC_Os01g29790
OsAffx.7834.1.S1_at--653--5531Chr01:17018778..17018802 (25 bp)
GAAACTCAAGTACTGCAGGGCGCCA
LOC_Os01g29790
OsAffx.7834.1.S1_at--122--1411NONE
AGACTCCGATTCTTAGTTGGGTGGC
NONE
OsAffx.7834.1.S1_at--619--1071Chr01:17017692..17017716 (25 bp)
AGGGCCTCAACCCAGTATTGTGCGG
LOC_Os01g29790
OsAffx.7834.1.S1_at--437--8212Chr07:9014368..9014387 (20 bp)
GGAATGAAGCATACGCTCGGCCTTA
NONE
OsAffx.7834.1.S1_at--763--971Chr01:17017229..17017586 (25 bp)
AGGAGACCCCGTTGGTGGTGACTCT
LOC_Os01g29790
OsAffx.7834.1.S1_at--523--8951Chr01:17017193..17017217 (25 bp)
TGACAGACGCCTGTGCGAAGCGAAT
LOC_Os01g29790
OsAffx.7834.1.S1_at--1157--1311Chr01:17017090..17017114 (25 bp)
AGAGGCCGCCGAAGAGTACGCATCT
LOC_Os01g29790
OsAffx.7834.1.S1_at--638--6153Chr07:9013795..9013819 (25 bp)
GAGGTCACCGGAACTATTGCACCTG
NONE
OsAffx.7834.1.S1_at--910--1871Chr01:17017026..17017050 (25 bp)
ACGATCTCGGCCTTGGTTGGGTAAT
LOC_Os01g29790
OsAffx.7834.1.S1_at--748--7694Chr11:19581314..19581335 (22 bp)
GGGTAATCCTTCACAGAGAGGCCAA
NONE
Target Sequence 
AGATGCCTGGCCTGGTGAAACTCAAGTACTGCAGGGCGCCAACAAGACTCCGATTCTTAGTTGGGTGGCGGTTGATGAGG
TGGGTGGCGGTGTGAAGGGCCTCAACCCAGTATTGTGCGGGAAGGTTGGCTTGAAAAAGAAAGGAGCGCGTGATGTTGTT
CAGGGAATGAAGCATACGCTCGGCCTTACCGTTCTGTGGGGAGGTGTGGGGGCAAGACATCCGCAAGGAGACCCCGTTGG
TGGTGACTCTGGGTGGTGGGATGACAGACGCCTGTGCGAAGCGAATGAGAGCCTCATGACCAAATTGGCCAAGACGACAA
TGCCAAAGGTCAATGTTGGTGGAGGTAGTGACAAAGGCACGTGCAGAGGCCGCCGAAGAGTACGCATCTGCCGGGAGAGG
ATAGAGGTCACCGGAACTATTGCACCTGACGATCTCGGCCTTGGTTGGGTAATCCTTCACAGAGAGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis