Browse Element(s) Details


Os.12311.1.S1_x_at

Description gb:AK060132.1
DB_XREF= gi:32970150
TID=Os.12311.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative r40c1 protein (P0436E04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C04, full insert sequence.
FL= gb:AK104555.1 gb:AK071375.1 gb:AK104820.1 gb:AK060132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0145011/11stress responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed
LOC_Os01g01484Os.809.1.A1_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.37961.1.S1_s_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.27455.1.S1_x_at2/111+245523..253674Light-mediated development protein DET1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12311.1.S1_x_at--942--2511Chr01:225473..225497 (25 bp)
AACTTCGACGCGCTCCATGGAGACA
LOC_Os01g01450
Os.12311.1.S1_x_at--224--5431Chr01:225522..225546 (25 bp)
GAACCACCCTGGTGCTCTGGGAGTG
LOC_Os01g01450
Os.12311.1.S1_x_at--376--5351Chr01:225571..225739 (25 bp)
GAAGATTGTTCCCTGGTGATCAAAT
LOC_Os01g01450
Os.12311.1.S1_x_at--462--351Chr01:225790..225814 (25 bp)
ATAAGAGGCGCCTCTGATCGATGGA
LOC_Os01g01450
Os.12311.1.S1_x_at--357--1591Chr01:225875..225899 (25 bp)
AGCTCTGTAATAATCCAGCCATCTC
LOC_Os01g01450
Os.12311.1.S1_x_at--381--3031Chr01:225886..225910 (25 bp)
AATCCAGCCATCTCATTGTTTGGAA
LOC_Os01g01450
Os.12311.1.S1_x_at--682--7791Chr01:225936..225960 (25 bp)
GGTCCCGGTACGAATATGAACATGT
LOC_Os01g01450
Os.12311.1.S1_x_at--721--5491Chr01:225953..225977 (25 bp)
GAACATGTCACGTCTGTGTGTGTGT
LOC_Os01g01450
Os.12311.1.S1_x_at--791--7471Chr01:225974..225998 (25 bp)
GTGTGATACTGTTACTTGTGATGCA
LOC_Os01g01450
Os.12311.1.S1_x_at--469--2071Chr01:225987..226011 (25 bp)
ACTTGTGATGCATCTACGTACATTG
LOC_Os01g01450
Os.12311.1.S1_x_at--981--7011Chr01:226004..226028 (25 bp)
GTACATTGCATACAAGCTGCTGTTG
LOC_Os01g01450
Target Sequence 
AACTTCGACGCGCTCCATGGAGACAAGGACCACGGCGGCGTGCGCGACGGAACCACCCTGGTGCTCTGGGAGTGGTGCGA
GGGTGACAACCAGCGCTGGAAGATTGTTCCCTGGTGATCAAATCAAATCTATCTGTCTATCTCTACATATGAGTGAGGGA
GGTTTATGGAATAATAAGAGGCGCCTCTGATCGATGGAGGGGCCGGCAGGTGTGGTCGCTCGACTGGCCCTAGCTAAGTG
TTTTGTTTTGTTTGGTCCAGCTCTGTAATAATCCAGCCATCTCATTGTTTGGAATGTTTGTTGTTGATCCATAAAATTTG
GTCCCGGTACGAATATGAACATGTCACGTCTGTGTGTGTGTGATACTGTTACTTGTGATGCATCTACGTACATTGCATAC
AAGCTGCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12311.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis