Browse Element(s) Details


Os.52930.1.S1_at

Description gb:AK069975.1
DB_XREF= gi:32979999
TID=Os.52930.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037J01, full insert sequence.
FL= gb:AK069975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0140010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01360Os.34674.1.S1_at11/111+175409..177377POT family protein, expressed
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52930.1.S1_at--407--1271Chr01:202480..202504 (25 bp)
AGATATCCAATCGTTCAGCTTCAGC
LOC_Os01g01400
Os.52930.1.S1_at--1122--5851Chr01:202505..202529 (25 bp)
GAGCCACAGGCAGCGTCAAAGGAGA
LOC_Os01g01400
Os.52930.1.S1_at--1100--7611Chr01:202563..202587 (25 bp)
GGGAACAGCTTATCATCATCGACGA
LOC_Os01g01400
Os.52930.1.S1_at--471--5691Chr01:202589..202613 (25 bp)
GACTTCACCAGTGCCGTCACATGTT
LOC_Os01g01400
Os.52930.1.S1_at--620--9691Chr01:202605..202629 (25 bp)
TCACATGTTCTACTTCTAGGGCCAA
LOC_Os01g01400
Os.52930.1.S1_at--883--2371Chr01:202652..202676 (25 bp)
AAACCGCTGGGCCTGGACGACAAGA
LOC_Os01g01400
Os.52930.1.S1_at--452--5391Chr01:202717..202741 (25 bp)
GAAGCAGAGGGCTACCACCAGCACA
LOC_Os01g01400
Os.52930.1.S1_at--44--31Chr01:202787..202811 (25 bp)
ATTGGAGCCGGAACACAGATCAAGA
LOC_Os01g01400
Os.52930.1.S1_at--359--1451Chr01:202809..202833 (25 bp)
AGAAGCCATTGCTGCCATTTGAACC
LOC_Os01g01400
Os.52930.1.S1_at--498--3371NONE
CACCTTCAGCAAGCTCAGGCGGAAG
NONE
Os.52930.1.S1_at--585--10011Chr01:202898..202922 (25 bp)
TAGCTTGCTGCCCTTTTTACTACAG
LOC_Os01g01400
Target Sequence 
AGATATCCAATCGTTCAGCTTCAGCGAGCCACAGGCAGCGTCAAAGGAGAAGGCGTCGCCCAGGCCCAGCATCACCGAGG
AGTGGGAACAGCTTATCATCATCGACGACGACTTCACCAGTGCCGTCACATGTTCTACTTCTAGGGCCAACCCCAAGCTG
CCGTCCCCAGTGAAACCGCTGGGCCTGGACGACAAGACAAGCAGGATTCTGGAGAGGCTGGAAGCTCCCAGGGCAAAGAA
GCAGAGGGCTACCACCAGCACACGCACCGGCAACAGCAACACAACTCCACCACCACCAGCGTCCAGCATTGGAGCCGGAA
CACAGATCAAGAAGCCATTGCTGCCATTTGAACCCAGCGCAAGCCAACCTCTGAGACCCACCTTCAGCAAGCTCAGGCGG
AAGCCCACTGCAGCTACCTAGCTTGCTGCCCTTTTTACTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis