Browse Element(s) Details


Os.32481.1.S1_at

Description gb:AK072797.1
DB_XREF= gi:32982820
TID=Os.32481.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0436E04.10 (P0436E04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139M11, full insert sequence.
FL= gb:AK104280.1 gb:AK072797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0142011/11expressed protein
LOC_Os02g552005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32481.1.S1_at--182--1392Chr01:210799..210823 (25 bp)
AGACCTCTTTGAGTCCCTGAGGCAC
LOC_Os01g01420
Os.32481.1.S1_at--707--5832Chr01:210800..210824 (25 bp)
GACCTCTTTGAGTCCCTGAGGCACC
LOC_Os01g01420
Os.32481.1.S1_at--788--1752Chr01:210801..210825 (25 bp)
ACCTCTTTGAGTCCCTGAGGCACCA
LOC_Os01g01420
Os.32481.1.S1_at--871--4272Chr01:210802..210826 (25 bp)
CCTCTTTGAGTCCCTGAGGCACCAC
LOC_Os01g01420
Os.32481.1.S1_at--1105--3752Chr01:210803..210827 (25 bp)
CTCTTTGAGTCCCTGAGGCACCACG
LOC_Os01g01420
Os.32481.1.S1_at--751--10791Chr01:210943..210967 (25 bp)
TTGTATCGCCCTATCAAATTTAAGT
LOC_Os01g01420
Os.32481.1.S1_at--960--8731Chr01:210944..210968 (25 bp)
TGTATCGCCCTATCAAATTTAAGTT
LOC_Os01g01420
Os.32481.1.S1_at--643--6871Chr01:210945..210969 (25 bp)
GTATCGCCCTATCAAATTTAAGTTG
LOC_Os01g01420
Os.32481.1.S1_at--1140--10131Chr01:210946..210970 (25 bp)
TATCGCCCTATCAAATTTAAGTTGT
LOC_Os01g01420
Os.32481.1.S1_at--532--531Chr01:210947..210971 (25 bp)
ATCGCCCTATCAAATTTAAGTTGTT
LOC_Os01g01420
Os.32481.1.S1_at--637--9331Chr01:210948..210972 (25 bp)
TCGCCCTATCAAATTTAAGTTGTTT
LOC_Os01g01420
Target Sequence 
AGACCTCTTTGAGTCCCTGAGGCACCACGGAGACGAAACTTCTCGGAAGTACTGATTCCTTGTTGCCTCTGCCGTGTTAT
GTGAATGTTATCCCACTGTATATTTATTGATGATATAATATAAGAAAAGAACAGCACAGATGTTTTGTATCGCCCTATCA
AATTTAAGTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis