Browse Element(s) Details


OsAffx.1876.2.S1_at

Description tigr:9629.m00046
TID=OsAffx.1876.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0144011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1876.2.S1_at--869--1011Chr01:217518..217542 (25 bp)
AGGTTCTGCGCCGATGGGAGCTGTG
LOC_Os01g01440
OsAffx.1876.2.S1_at--496--9431Chr01:217455..217479 (25 bp)
TCGGGACAGGCGGACTACATCAACG
LOC_Os01g01440
OsAffx.1876.2.S1_at--752--5651Chr01:217451..217475 (25 bp)
GACAGGCGGACTACATCAACGCGCA
LOC_Os01g01440
OsAffx.1876.2.S1_at--333--4691Chr01:217446..217470 (25 bp)
GCGGACTACATCAACGCGCAGCCGA
LOC_Os01g01440
OsAffx.1876.2.S1_at--205--6211Chr01:217410..217434 (25 bp)
GAGGCGCGGCCGTCGATAGGGAACC
LOC_Os01g01440
OsAffx.1876.2.S1_at--406--7531Chr01:217327..217351 (25 bp)
GTGGCAGCCGCACCGACTTGCTGGC
LOC_Os01g01440
OsAffx.1876.2.S1_at--352--611Chr01:217292..217316 (25 bp)
ATGCGCCATCATCGAATCTGCTGGC
LOC_Os01g01440
OsAffx.1876.2.S1_at--1061--412Chr06:20055626..20055649 (24 bp)
ATCATCGAATCTGCTGGCGAATCAC
NONE
OsAffx.1876.2.S1_at--1143--3052Chr06:20055632..20055652 (21 bp)
AATCTGCTGGCGAATCACCGCTCGA
NONE
OsAffx.1876.2.S1_at--775--4711Chr01:217273..217297 (25 bp)
GCTGGCGAATCACCGCTCGACGACA
LOC_Os01g01440
OsAffx.1876.2.S1_at--226--3331Chr01:217236..217260 (25 bp)
CAGCGACGAATGGTGTTACCTGGGA
LOC_Os01g01440
Target Sequence 
AGGTTCTGCGCCGATGGGAGCTGTGGCGGAGGCGAGAAGTGGTGGGCGTCGCTGCTGGGGTGGTCGGGACAGGCGGACTA
CATCAACGCGCAGCCGACGTCGAGGAAGGAGGCGCGGCCGTCGATAGGGAACCCGGCGGCGGAGCAGCAGGGTGGTGGGA
AGAGGTTCAGTGTGCTGATGGAGGAGAAGGCGTGGCAGCCGCACCGACTTGCTGGCATTTCTCCCCATGCGCCATCATCG
AATCTGCTGGCGAATCACCGCTCGACGACATGGAAGTGGGGGCAGCGACGAATGGTGTTACCTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1876.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis