Browse Element(s) Details


Os.810.2.S1_x_at

Description gb:NM_183472.1
DB_XREF= gi:34894071
GEN=P0436E04.20
TID=Os.810.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU057065(S21110),AU057064(S21110)~unknown protein (B1109A06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0436E04.20 (P0436E04.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0151010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed
LOC_Os01g01484Os.809.1.A1_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.37961.1.S1_s_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.27455.1.S1_x_at2/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01500OsAffx.23027.2.S1_x_at11/111+256409..256711hypothetical protein
LOC_Os01g01500OsAffx.23027.2.S1_at11/111+256409..256711hypothetical protein
LOC_Os01g01510Os.810.1.S1_at11/111+258332..265273expressed protein
LOC_Os01g01510Os.810.2.S1_x_at10/111+258332..265273expressed protein
LOC_Os01g01510Os.810.3.S1_x_at5/111+258332..265273expressed protein
LOC_Os01g01520Os.9784.1.S1_at11/111+266948..271886Transferase family protein, expressed
LOC_Os01g01530NANA1+273087..274683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.810.2.S1_x_at--472--1691Chr01:262994..263018 (25 bp)
AGCCATCAAACCTAGTAAGGTCCTG
LOC_Os01g01510
Os.810.2.S1_x_at--1010--9771Chr01:263009..263033 (25 bp)
TAAGGTCCTGGTAGCTGCGGCAAAA
LOC_Os01g01510
Os.810.2.S1_x_at--1035--2411NONE
AAAACAAGTTTGTCTCTGGTGATGA
NONE
Os.810.2.S1_x_at--125--7171Chr01:264042..264066 (25 bp)
GTCTCTGGTGATGACGAGCTTCCAA
LOC_Os01g01510
Os.810.2.S1_x_at--256--3351Chr01:264099..264123 (25 bp)
CACGAATTACGTGTTCTTGCAAGAG
LOC_Os01g01510
Os.810.2.S1_x_at--1098--672Chr01:264220..264244 (25 bp)
ATGACATTGGACCATCAGAGTCTGA
LOC_Os01g01510
Os.810.2.S1_x_at--413--8011Chr01:264274..264298 (25 bp)
GGAGGACTGAAAAGCTCTCGAGTAA
LOC_Os01g01510
Os.810.2.S1_x_at--526--1411Chr01:264299..264399 (25 bp)
AGAACAGAAATACTCGCCGAACCCT
LOC_Os01g01510
Os.810.2.S1_x_at--218--4151Chr01:264393..264413 (21 bp)
CGCCGAACCCTGTTATTGAATCACT
LOC_Os01g01510
Os.810.2.S1_x_at--766--1132Chr01:264720..264744 (25 bp)
AGTGCGTGGCGTGAAGAAGCCCTCA
LOC_Os01g01510
Os.810.2.S1_x_at--6--2751Chr01:264733..264757 (25 bp)
AAGAAGCCCTCAGGACCATACGGAG
LOC_Os01g01510
Target Sequence 
AGCCATCAAACCTAGTAAGGTCCTGGTAGCTGCGGCAAAATCCAATAAAAACAAGTTTGTCTCTGGTGATGACGAGCTTC
CAAAGCGAGATGATATTGGTGAAAGACGACGAAAGCACGAATTACGTGTTCTTGCAAGAGTAGGAGCTAGTACACTTGAA
GATGATGACTTGCCAGAGGAAGATGATCATACTGAAGAGAGACCTAATCAATTAAGTGAAGAAAATGGCAGTGATGATGA
CATTGGACCATCAGAGTCTGAAGATGAGTTTTACAAGGATGTTAAAAGGCGGAGGACTGAAAAGCTCTCGAGTAAAGAAC
AGAAATACTCGCCGAACCCTGTTATTGAATCACTGGAGGAAGAAACTGAAGGAGATGGCAAGAGGAAGATCTCATACCAG
ATGGAGAAGAACCGGGGGTTGACTCGCTCGAGAAATAAGAAGCTTAAGAATCCACGGAAGAAATACAGGGTTAAGCATCA
AACAAAACTTGTTAAGCGGGGAGGTCAAGTGCGTGGCGTGAAGAAGCCCTCAGGACCATACGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.810.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis