Browse Element(s) Details


Os.27278.1.S1_s_at

Description gb:AK066969.1
DB_XREF= gi:32976987
TID=Os.27278.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088I21, full insert sequence.
FL= gb:AK066969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0172011/11Peroxisomal membrane anchor protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01700Os.20521.1.S2_at8/111+368633..371215RING-box protein 1, putative, expressed
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0007031biological_processperoxisome organization and biogenesis
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27278.1.S1_s_at--680--9291Chr01:380791..380815 (25 bp)
TCCGTTCATGCCAGTACCGGGAGAA
LOC_Os01g01720
Os.27278.1.S1_s_at--1161--6971Chr01:380778..380802 (25 bp)
GTACCGGGAGAACCTTCACCTGGAG
LOC_Os01g01720
Os.27278.1.S1_s_at--540--10511Chr01:380764..380788 (25 bp)
TTCACCTGGAGCATTTCCGGCGAGA
LOC_Os01g01720
Os.27278.1.S1_s_at--266--10671Chr01:380752..380774 (23 bp)
TTCCGGCGAGATCCTATGTTGAGCA
LOC_Os01g01720
Os.27278.1.S1_s_at--429--651Chr01:380633..380657 (25 bp)
ATGCAGAGGCCTGGGTACGGATTTC
LOC_Os01g01720
Os.27278.1.S1_s_at--1116--6991Chr01:380619..380643 (25 bp)
GTACGGATTTCAGCCTCAGATGAGC
LOC_Os01g01720
Os.27278.1.S1_s_at--1157--2991Chr01:380594..380618 (25 bp)
AATGACAGGTGGAACCCTGGCTCGC
LOC_Os01g01720
Os.27278.1.S1_s_at--141--3811Chr01:380545..380569 (25 bp)
CTCCGTATCAGCAGTATCACCATGG
LOC_Os01g01720
Os.27278.1.S1_s_at--246--1531Chr01:380536..380560 (25 bp)
AGCAGTATCACCATGGATCCACCAA
LOC_Os01g01720
Os.27278.1.S1_s_at--847--2811Chr01:380365..380389 (25 bp)
AAGTTGCAGCGGCATCGAGACCGTC
LOC_Os01g01720
Os.27278.1.S1_s_at--1104--9051Chr01:380193..380217 (25 bp)
TGCATGCGTCTCTCGTGTACAAAAT
LOC_Os01g01720
Target Sequence 
TCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATGCAGA
GGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCT
CCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGC
TCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCG
CCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCA
GGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATT
ACTCCATTTCTTTTTTTTTTNGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27278.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis