Browse Element(s) Details


Os.23182.1.S1_at

Description gb:CB627999
DB_XREF= gi:29622988
DB_XREF=OSIIEb03E18.r
CLONE=OSIIEb03E18
TID=Os.23182.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.23182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (P0005A05.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0174011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01700Os.20521.1.S2_at8/111+368633..371215RING-box protein 1, putative, expressed
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23182.1.S1_at--561--3811Chr01:389450..389474 (25 bp)
CTCCTTCATGCCCTGTGGCAATAAG
LOC_Os01g01740
Os.23182.1.S1_at--238--611Chr01:389443..389467 (25 bp)
ATGCCCTGTGGCAATAAGCCATCTG
LOC_Os01g01740
Os.23182.1.S1_at--1026--8211Chr01:389434..389458 (25 bp)
GGCAATAAGCCATCTGATAACTCAG
LOC_Os01g01740
Os.23182.1.S1_at--671--351Chr01:389430..389454 (25 bp)
ATAAGCCATCTGATAACTCAGTGCT
LOC_Os01g01740
Os.23182.1.S1_at--238--9131Chr01:389409..389433 (25 bp)
TGCTGGGCGACCAACCCAGACAGAA
LOC_Os01g01740
Os.23182.1.S1_at--644--2611Chr01:389397..389421 (25 bp)
AACCCAGACAGAAGGCCTCAGTTCG
LOC_Os01g01740
Os.23182.1.S1_at--621--1411Chr01:389392..389416 (25 bp)
AGACAGAAGGCCTCAGTTCGACGAC
LOC_Os01g01740
Os.23182.1.S1_at--570--1471Chr01:389388..389412 (25 bp)
AGAAGGCCTCAGTTCGACGACATCG
LOC_Os01g01740
Os.23182.1.S1_at--448--871Chr01:389385..389409 (25 bp)
AGGCCTCAGTTCGACGACATCGTCG
LOC_Os01g01740
Os.23182.1.S1_at--258--5671Chr01:389370..389394 (25 bp)
GACATCGTCGCCATACTTGAGAGCT
LOC_Os01g01740
Os.23182.1.S1_at--696--9171Chr01:389218..389242 (25 bp)
TCGCTACAGAACCACCCGACGATCT
LOC_Os01g01740
Target Sequence 
CTCCTTCATGCCCTGTGGCAATAAGCCATCTGATAACTCAGTGCTGGGCGACCAACCCAGACAGAAGGCCTCAGTTCGAC
GACATCGTCGCCATACTTGAGAGCTACATAGAAGCTCTTGAAGAGGATCCATCCTTCTTGCAGTCATATATACCGCCTCC
GCATCCGCTGCACCATCACCATCACCAGCATCATAATCATCATCATCAACAGAGCCTTCTCCGGTGCTTCCCTCGCTACA
GAACCACCCGACGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis