Browse Element(s) Details


Os.38048.1.S1_a_at

Description gb:AK070363.1
DB_XREF= gi:32980387
TID=Os.38048.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.38048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005A05.27 (P0005A05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047F20, full insert sequence.
FL= gb:AK058708.1 gb:AK070363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0179011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38048.1.S1_a_at--1053--10551Chr01:414379..414403 (25 bp)
TTGCTAGCTATAAAGGTCAAGGGAG
LOC_Os01g01790
Os.38048.1.S1_a_at--1049--7071Chr01:414364..414388 (25 bp)
GTCAAGGGAGAATTGCACAGCCTGG
LOC_Os01g01790
Os.38048.1.S1_a_at--1014--3651Chr01:413471..413495 (25 bp)
CTTTGACCGGCTTAAACTTCCAGAG
LOC_Os01g01790
Os.38048.1.S1_a_at--610--8911Chr01:413468..413492 (25 bp)
TGACCGGCTTAAACTTCCAGAGTGA
LOC_Os01g01790
Os.38048.1.S1_a_at--437--6551Chr01:413440..413464 (25 bp)
GATTATGCTGAATCGAGCTGTTCTC
LOC_Os01g01790
Os.38048.1.S1_a_at--952--5251Chr01:413431..413455 (25 bp)
GAATCGAGCTGTTCTCACATGCAAA
LOC_Os01g01790
Os.38048.1.S1_a_at--586--1611Chr01:413425..413449 (25 bp)
AGCTGTTCTCACATGCAAATTGCAT
LOC_Os01g01790
Os.38048.1.S1_a_at--214--3171Chr01:413408..413432 (25 bp)
AATTGCATGAGTACAGAGAGAAGCT
LOC_Os01g01790
Os.38048.1.S1_a_at--482--5411Chr01:413389..413413 (25 bp)
GAAGCTGACACAGTTTCAAGAGAAA
LOC_Os01g01790
Os.38048.1.S1_a_at--550--5971Chr01:413370..413394 (25 bp)
GAGAAACGTATAGATGTCCCGTCAT
LOC_Os01g01790
Os.38048.1.S1_a_at--567--10191Chr01:413362..413386 (25 bp)
TATAGATGTCCCGTCATCTTCCTGA
LOC_Os01g01790
Target Sequence 
TTGCTAGCTATAAAGGTCAAGGGAGAATTGCACAGCCTGGCTTCAAAAATCCCCGGTGGGTGGATGGTGAGCTATTGGTG
CTCAATGGCAAGAGCACGATCCCACACCTTGGAGGTGCGGAGCTTGGTTTCCTGTACAGCGTGCCTGAGCAGAGTTTCTT
GGTACTCTTTGACCGGCTTAAACTTCCAGAGTGATGAGATTATGCTGAATCGAGCTGTTCTCACATGCAAATTGCATGAG
TACAGAGAGAAGCTGACACAGTTTCAAGAGAAACGTATAGATGTCCCGTCATCTTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38048.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis